Plant FIBer expression Database

Potri.002G022200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19980 203 / 1e-62 cytomatrix protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G239500
[exp]
518 / 0 AT1G19980 246 / 4e-79 cytomatrix protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017215
[exp]
238 / 7e-76 AT1G19980 187 / 1e-56 cytomatrix protein-related (.1)
Lus10021095
[exp]
230 / 1e-72 AT1G19980 195 / 3e-59 cytomatrix protein-related (.1)
Lus10034526
[exp]
193 / 3e-59 AT1G19980 137 / 8e-38 cytomatrix protein-related (.1)
PFAM info
Representative CDS sequence
>Potri.002G022200.1 pacid=42777196 polypeptide=Potri.002G022200.1.p locus=Potri.002G022200 ID=Potri.002G022200.1.v4.1 annot-version=v4.1
ATGGGTACTTCAAAGCGCACTAAAGTGGTAACTTCAGATCGTGAAAAATGGGATAAAGTGTTTGGCGGGCTGGTAAAATTACTAAAGAACCAACAAGAAC
AGCTCGAAACTCTTTTAAAAGAGAGGAAAATCCTTGAAGATCGCATAAAAACGCAACATGAGAGATGGGTTTCTGATATTCGTCTCTATGATGATCATAT
TTTGCAGATTAAGGGGGGTTTGGTGGAGAAAGACATGGCGTGTTTGCTTGAGGCTGCTAAAGGTGATTTGATGTTGGGATTGAAGCAGAGAGAGGTTTCT
CTTCACAAATTGAAATTAGAGCAAACAGAAGATGAATTGGCAGATTTCCAAGCATTGTTTGGCTACCTCTCTCAGAGCCTAAAAGAAAATTCTGAAGAAA
CTGCCAATGGAAAGGGTCCCGGGCATAGTGATTTAAAGTCTGGTGAAGCTAAAAAGTTGGAAGCCGAAGTAGAAAGGCTGAAGCTTGAGAACGAGAAGCT
TGTTTTTGAAAAGAATTCTGAAGTATCTGCTCTCCAGAAAGGGAAAAACTTTGTGTGGAATCAATATGATATTCTAGAAAGCAATCTCACCAATAAATTA
AGGATTAAAGAAGCTGAAGTTGAGAAGGCAAATGAGAAGATAGCAGAAGTTCTTGCCACTGCAGAGTTGCTCCAATCTTCAAATGATGAGAAGAATGAAA
TTATTCAAAGATTGAATACTAAGGTGGCCAAGATAGAAGCTGACACAAAGAAATGGAAGGAAGAAACTTCTAAACTCTCCCGGGAGTTGGAATTGTTAAG
AAAGTTAAGAACTGCCCAAATTACAACTGTAATGAAACCTTGTAGTGCACCAGTTAGAACTTTCACTTCGGGAGTCAAAAGCTGCGGCAGAGATTGTAAC
CTTGTTGACAGGAAAGTATTGCAATCCGCTGTTCCTTCCAAGGATGCTGAAAAGAGTATCAGAAGCTTGAAGAAGAAAAGGATGGATGCTTCTGTTTTTG
AAGCTCCAAGATTATTCTCTTCTTCCTTCAAAATTCCTAAAGTGAAGGTCCCATCTACTCCTGTCTAA
AA sequence
>Potri.002G022200.1 pacid=42777196 polypeptide=Potri.002G022200.1.p locus=Potri.002G022200 ID=Potri.002G022200.1.v4.1 annot-version=v4.1
MGTSKRTKVVTSDREKWDKVFGGLVKLLKNQQEQLETLLKERKILEDRIKTQHERWVSDIRLYDDHILQIKGGLVEKDMACLLEAAKGDLMLGLKQREVS
LHKLKLEQTEDELADFQALFGYLSQSLKENSEETANGKGPGHSDLKSGEAKKLEAEVERLKLENEKLVFEKNSEVSALQKGKNFVWNQYDILESNLTNKL
RIKEAEVEKANEKIAEVLATAELLQSSNDEKNEIIQRLNTKVAKIEADTKKWKEETSKLSRELELLRKLRTAQITTVMKPCSAPVRTFTSGVKSCGRDCN
LVDRKVLQSAVPSKDAEKSIRSLKKKRMDASVFEAPRLFSSSFKIPKVKVPSTPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19980 cytomatrix protein-related (.1... Potri.002G022200
[exp]
0 1
AT5G11860 SSP5 SCP1-like small phosphatase 5 ... Potri.003G173700
[exp]
2.00 0.7886
AT5G28050 Cytidine/deoxycytidylate deami... Potri.013G036000
[exp]
6.48 0.7663
AT3G19770 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR ... Potri.019G066200
[exp]
8.36 0.6892
AT4G23860 PHD finger protein-related (.1... Potri.003G140000
[exp]
9.32 0.7653
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.007G034200
[exp]
11.22 0.7294
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.016G081700
[exp]
12.00 0.7507
AT3G02470 SAMDC S-adenosylmethionine decarboxy... Potri.004G106800
[exp]
14.69 0.7485 Pt-SAMDC.3
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.001G122800
[exp]
14.83 0.7639
AT5G25620 YUC6 YUCCA6, Flavin-binding monooxy... Potri.006G243400
[exp]
16.06 0.6643
AT5G56740 HAG02, HAC7, HA... histone acetyltransferase of t... Potri.013G068200
[exp]
16.27 0.7607

Potri.002G022200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.