Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75730 84 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238800 [exp] 998 / 0 AT1G75730 79 / 6e-15 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G022800.7 pacid=42779450 polypeptide=Potri.002G022800.7.p locus=Potri.002G022800 ID=Potri.002G022800.7.v4.1 annot-version=v4.1 ATGATAGAAATGAACAAGAATAAAGACGTCAGGCCAAGAGCCAGTCGGTTCTCAAGACAACAGATTAAGCAATCTGGACAGAAGCTTCTCTCTGGTGATT TTTTTTGGTGTTTGAATGGTGGTGATTTTGTTGTTTCTTGGGAGAAATCGAAGAGAATTAAAAGGTTGAGTGCTGTTAATAATAATAATAGTGAAAGTAA TAAGGGGAGTTGTAGTTACGAGGTGGAGGAAGAAAAGAAGTGTGAGATGGGAGGTGGTGGAGGTTGTGACGTGTTTGATAAAGAAGTTCTTCAAGCACCT TCCGCTACTATTGGTACTGCAAGTACTAGCAACAAGAGATTCAAGCTTCCCAGAAAGCTTATTGATGATTGCAATGGTGTTGTTCCGAGGAAGCTACGGT CAGCCATGAAGAAACGCAATCGCGAATCTGTCTCCCCACCTTTTCCAGATTCAAAGAAGCTAAGCCACTCTCATGGTGGGGTGGAATCACTGAAAAGGGA TGGTTTAAAGAAACTGGGATTGAAAGTGACACAACCAGGGCCAGACTGGTCCAGTAAACAGAGTGTCTGTGGGCCAATAACCAAAGATGAAGAAGAAGTT GTGGAGACCTTGTATTCTTTGGCTGGAATGTTTACCAATAATGAAGAACCCAAAAATGATTGTAAATTGGGCAATGCTTCTTTGGATGCAAGTCGTTCCA CTTTGCAAGAACGTAGTGAGAGTGATTCCCCCATTATTGAAGCCGTAAAAGAGGACTTGAACTCAATTTGCCTTCCGAGAATTGATGAGGCTGCTGAGGA AACATGGCATGTCGAAACTGCCAAAGTTGATTGTTTGAACGAGCCTAGTTTTCAAGATTGGCCTACATTGTCCAGCGATAAAGTCCAAGGTGAATTAGGT AGTTGTGTTGCTCAAGTGAATCTGCCCACTATGTTTGCTAAACAGGAGGAGCTAAAGCCACTGTGTGATTCTTTCAATCTCTTCATTGCCCCTGAGCAAT ATCAGGATACTGTCAAAGTGAAGCAGTCCGCACAGTTGGAGACCTCACTCGAGAGAAAGCCAGACATTGCCTTGGGGCTGACAGCAACTGTAAGTCAACA GGATCAACGACATACAATCTGTCAATCCAAGACCAATGGTCCAGCATTGTGGCCAGGTTTGTCTTCAACTGTATCAAGTGGTGCATGCAATTATGGATCT TCATCACAATCTTCTGCCACCAAATTTCCTTCTTGGATGGATACTGATTGTGGTGCTACCAGGCCCAGTTCATTCCAAAAATGTTCTTCTACTGGAAAGG CTTCTAAAGTCAATACTGGTAAAAGATCATGGAAGAGGTCCTCAACCCATGTTTATATAAGTCGTCTCATTCAGGTTTTACAAATTCCAGAGAGCAGAGA TAGCTTGCCTCTGAATCTGAATCAACTGAGGCCACATGATATATTAAGGCAAGGTGTATTTATGACAATAAACAACTTCAATGGCAACAGGAATGGTTTG AATGGCGCTACACCTTCTAGAGCCATAGTTAACATGACTGACAAGAATTCAAATCAGCGACAAAGACTCCATCAAGATCAGCCACAGACTCCTTCTGGCG TGTACAATTCTCAGAAGCAGACTTTCAATTTCTTGTCTTTGTCAACTGGCGGGGGCAGCCTGGAAGCTAATAACATTTCTAATGGAGTTGGAAATAGGTC TGAACAATCAGCTCAGCAGCAATTTCCTTATCTGCACTCACATTTGCAACAGCAACATTCCACACTCGCGAGTTTCCCTATGTCCCAAGCATATTGCACA TCCTCATCTTACCCTGATCAACCTGCAGCACAGCAGGCCCGGGTTCCACAACCTCCCTACTTTGGCAACTTGTATTGTGGTTCTCGTACAAGTCCTTCAG GATTTGCAAAGCAGCAACAGGAGCAGCAACAGGAGCATCAGGAGCAACTACAACGGCTTTGGGAAGCTCAGCTTGCAGCAGCTCAATACAGGACGTCTGC AAATTCCACCACCATGACTCAGTTTCCGAACTGGCAAAATGTAAGGCAAGACTCGCCTACACAGATATCACGTGCCCAACCCACCATCCCAACTTTGTCA TCTCAAGAAGCACTGGGTCCCAAGTACGCTCAGATCTCTCAACAGCAGCTTATGACCATTACTACATTGCCTCATGCTAGGGTCAGAAGACAAGACCACC ATCTCTCTTCTGTTTATGAAGAAACTGGAGGTGGGTTTCGAACTGTTGGTGCACTGCCATTGCAATTACTCTGTAATGATCGTCTATGA
AA sequence Show only first row Show all	>Potri.002G022800.7 pacid=42779450 polypeptide=Potri.002G022800.7.p locus=Potri.002G022800 ID=Potri.002G022800.7.v4.1 annot-version=v4.1 MIEMNKNKDVRPRASRFSRQQIKQSGQKLLSGDFFWCLNGGDFVVSWEKSKRIKRLSAVNNNNSESNKGSCSYEVEEEKKCEMGGGGGCDVFDKEVLQAP SATIGTASTSNKRFKLPRKLIDDCNGVVPRKLRSAMKKRNRESVSPPFPDSKKLSHSHGGVESLKRDGLKKLGLKVTQPGPDWSSKQSVCGPITKDEEEV VETLYSLAGMFTNNEEPKNDCKLGNASLDASRSTLQERSESDSPIIEAVKEDLNSICLPRIDEAAEETWHVETAKVDCLNEPSFQDWPTLSSDKVQGELG SCVAQVNLPTMFAKQEELKPLCDSFNLFIAPEQYQDTVKVKQSAQLETSLERKPDIALGLTATVSQQDQRHTICQSKTNGPALWPGLSSTVSSGACNYGS SSQSSATKFPSWMDTDCGATRPSSFQKCSSTGKASKVNTGKRSWKRSSTHVYISRLIQVLQIPESRDSLPLNLNQLRPHDILRQGVFMTINNFNGNRNGL NGATPSRAIVNMTDKNSNQRQRLHQDQPQTPSGVYNSQKQTFNFLSLSTGGGSLEANNISNGVGNRSEQSAQQQFPYLHSHLQQQHSTLASFPMSQAYCT SSSYPDQPAAQQARVPQPPYFGNLYCGSRTSPSGFAKQQQEQQQEHQEQLQRLWEAQLAAAQYRTSANSTTMTQFPNWQNVRQDSPTQISRAQPTIPTLS SQEALGPKYAQISQQQLMTITTLPHARVRRQDHHLSSVYEETGGGFRTVGALPLQLLCNDRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75730			unknown protein		Potri.002G022800 [exp]	0	1
AT4G15030			unknown protein		Potri.001G266200 [exp]	2.82	0.8378
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	6.16	0.8568
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	13.07	0.8374
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	18.76	0.8063
AT5G47435			formyltetrahydrofolate deformy...		Potri.003G078000 [exp]	21.09	0.8270
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	25.61	0.8304
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	31.17	0.8097
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.012G021400 [exp]	35.46	0.7990
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	47.74	0.7985
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Potri.001G374100 [exp]	49.47	0.7738

Compare expression of checked genes

Potri.002G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.