Plant FIBer expression Database

Potri.002G023300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45730 530 / 0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G238200
[exp]
742 / 0 AT2G45730 512 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034521
[exp]
616 / 0 AT2G45730 549 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Lus10033150
[exp]
481 / 5e-169 AT2G45730 432 / 4e-150 eukaryotic initiation factor 3 gamma subunit family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04189 Gcd10p Gcd10p family
Representative CDS sequence
>Potri.002G023300.6 pacid=42777944 polypeptide=Potri.002G023300.6.p locus=Potri.002G023300 ID=Potri.002G023300.6.v4.1 annot-version=v4.1
ATGTCCCAAAATAGCATCCAGTCAAATTCAATTCAAAACCCTAGAGTAACCTGGGAAGGTTGCAGTGTCTTGCTCGACATTAACGACGGCGACCGCCTTG
TTTTTGCTCGATTAACAGCTGGCTCGACATTGAAAATTGGAAATAAGAATTTCTCTTTACGGCCCTTGATTGGATGCCCCTTCGGTTCTTCTTTTCAAAT
TGAGAATGGGACTGAAGGGCTTTGTTTATGTAGGTTTGTTCCTTCCACAGAAGTAGATAATAATGATCAAGAAAAAGGAGGATCTCAAATAATGGACGAA
TGTAGGGATAATCGAGCTATTGTTGATAATAATGAAGCCCAGACCCTAACTAGTGGAGACATAGATGAAATGCGGAGGCAGGGTGTGAAAGGTGATGAGA
TAATTGAAGCTCTCATTGCCAATAGTGCAACATATGAGAAAAAAACAACATTTTCTCAAGAGAAATATAGGATTAAGAAGCAAAAAAAGTATGCCCCTAG
AGTACTTCTGAGGCGACCTTCTGCTAGAAGCATATGCGAGGCGTACTTCAAGAAATATCCACATAGAATCGGATTCCTGCGAGTAGATGCATTATCCCTG
TTGCTTTCACTTGCTAATGTTACTGCAAACTCTGACATCCTGTTAGTGGATATGGTTGGTGGCCTTCTTACTGGTGCTGTGGCAGAGCGTTTAGGAGGTA
CAGGTTACGTTTGCAATACATATCTTGGAAGTACACCGTATCCTGTGGAGATAGTCAGAACATTCAACTTTGATAATGAAATCTGCAAAAGGATTGTGCG
GGCTCCTCTGCGTGACCTCTGTTTAGACCAAATTGGAACATCCGAGATAATTGATGCCAGCAATGCAGAATTAAATGGCCAAACCTCCATCAACATGGAA
GAAATGTCTCTTCCATCCAACCACGAGGCTGTGGATTCAGAGACTATTGTCTCTCCACAAAGTAAAATGGGCAAACCCCCTAAAGCTGGCGAAAAGGCAT
CAGAAGAAGCCATTAAGTCATGGAAGGAAAATGGGTTCTCTAGTCTAATAATTGCTGCGCCAGATGCAGATGCTTGGAGCTTAGCCAAGGATCTACTGCC
ACTTCTATCATATTCAGCACCATTTGCTATCTACCACCAGTATCTTCAGCCACTTGCAACATGCATGCACAATTTACAGCAGGGGAAAATGGCAATTGGT
TTGCAAATTTCAGAACCTTGGCTACGTGAATATCAGGTTCTTCCATCAAGAACTCATCCATTGATGCAGATGAGTGCCTTTGGGGGTTACATTCTCAGTG
GGACCAAGATATGTAGCAGTAGCTAA
AA sequence
>Potri.002G023300.6 pacid=42777944 polypeptide=Potri.002G023300.6.p locus=Potri.002G023300 ID=Potri.002G023300.6.v4.1 annot-version=v4.1
MSQNSIQSNSIQNPRVTWEGCSVLLDINDGDRLVFARLTAGSTLKIGNKNFSLRPLIGCPFGSSFQIENGTEGLCLCRFVPSTEVDNNDQEKGGSQIMDE
CRDNRAIVDNNEAQTLTSGDIDEMRRQGVKGDEIIEALIANSATYEKKTTFSQEKYRIKKQKKYAPRVLLRRPSARSICEAYFKKYPHRIGFLRVDALSL
LLSLANVTANSDILLVDMVGGLLTGAVAERLGGTGYVCNTYLGSTPYPVEIVRTFNFDNEICKRIVRAPLRDLCLDQIGTSEIIDASNAELNGQTSINME
EMSLPSNHEAVDSETIVSPQSKMGKPPKAGEKASEEAIKSWKENGFSSLIIAAPDADAWSLAKDLLPLLSYSAPFAIYHQYLQPLATCMHNLQQGKMAIG
LQISEPWLREYQVLPSRTHPLMQMSAFGGYILSGTKICSSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45730 eukaryotic initiation factor 3... Potri.002G023300
[exp]
0 1
AT3G16810 APUM24 pumilio 24 (.1) Potri.008G211400
[exp]
3.31 0.8141
AT1G48920 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (... Potri.005G093100
[exp]
7.74 0.7774
AT4G29510 ATPRMT1B, ATPRM... PROTEIN ARGININE METHYLTRANSFE... Potri.006G149400
[exp]
10.24 0.7616
AT1G07840 Sas10/Utp3/C1D family (.1.2.3) Potri.005G152200
[exp]
13.63 0.7647
AT5G02820 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTERO... Potri.006G132600
[exp]
14.00 0.7673 Pt-RHL2.1
AT4G32720 ATLA1 La protein 1 (.1.2) Potri.018G037900
[exp]
16.43 0.6706
AT4G37130 hydroxyproline-rich glycoprote... Potri.007G036600
[exp]
19.89 0.7505
AT4G21220 AtLpxD2 lipid X D2, Trimeric LpxA-like... Potri.004G039400
[exp]
20.97 0.6687
AT3G04820 Pseudouridine synthase family ... Potri.005G051400
[exp]
22.04 0.7600
AT3G07870 F-box and associated interacti... Potri.011G137200
[exp]
22.84 0.7255

Potri.002G023300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.