Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-E2FC.1,E2Fc
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47870 274 / 2e-88 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G22220 240 / 2e-74 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT2G36010 215 / 9e-65 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT3G01330 59 / 2e-09 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT5G14960 59 / 3e-09 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G48160 55 / 4e-08 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161900 [exp] 256 / 1e-80 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.006G205100 [exp] 252 / 4e-79 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.004G200800 [exp] 248 / 2e-77 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.016G072300 [exp] 246 / 4e-77 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.015G070300 [exp] 56 / 3e-08 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 54 / 8e-08 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033151 [exp] 268 / 4e-86 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10016972 [exp] 248 / 2e-77 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 244 / 5e-77 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10004217 [exp] 227 / 1e-69 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 227 / 6e-69 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 226 / 2e-68 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10013321 [exp] 174 / 1e-49 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10032439 [exp] 53 / 2e-07 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10042941 [exp] 53 / 3e-07 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 45 / 7e-05 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02319 [poplar] [flax] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [poplar] [flax] PF16421 [poplar] [flax] E2F_CC-MB E2F transcription factor CC-MB domain
Representative CDS sequence Show only first row Show all	>Potri.002G023400.2 pacid=42777595 polypeptide=Potri.002G023400.2.p locus=Potri.002G023400 ID=Potri.002G023400.2.v4.1 annot-version=v4.1 ATGGCGAACGCCAGCGAAGATCCGAACCGGACAATCAATCCATCGCAATTTCACTTTCATTTACTTCACTCTCATTCTCACTTTCAAAATCAGAATTTAT TTTCTTCTTCAAATAATTCAACTCCTTCAAATCGACTGTTCCCTTCCTCTTTCCGAAAACCTCACCACCTGCCTCCTCCTCCTCCTGATAACAACAAAAC TCCTATCGGCTTTCAATTCCATAGTTCCAACACGCATTCTGCATTTCGTGACGTTGCGCTGGGAATAAAAAGTGAAAGTGATGATCATGAGGTTTGGACT AATAGAGATGCCGCTTTCCCTGCGCAAAGTGATATAGTTACTGATATAACTCTTGCTCCTCGGTCATCTTCTGGGGGTAAGCATAAAAATAAGTCAAGGG TTCCGAAACATGCCAAATCAGTGACTCAAAGAATGAATGCTGAGTCTCTTAATGGACTGAATTTGGCTAGTGGTTGTCGATATGACAGTTCTTTAGGCTT GTTAACCAAGAAATTTGTCAAGTTGATCAAGGAGGCTCAGGACGGGACCCTTGATCTGAACAAAACAGCAGAAGTGTTGGAGGTCCAGAAAAGGAGGATA TATGATATTACAAATGTTTTGGAAGGAATAGGATTAATAGAGAAAACTTCAAAAAATCATATACGCTGGAAGAAGGAATTTGATGACTGTGAGCAAAGGA TGTTGGATAATCATGCTAGAATAAAGGCTGAAGTGGAAAGTTTATATACTGAAGAGTTCAGGCTTGAGGAAGCTATAAGGGATAGACAAGAACTTCTGAG AGGCTTGAAGGAAGATGTGGTTTGTCGAAAGCATCTCTTTCTAACAGAGGAAGATATTACCAGCCTTTCATGCTTCCAGAATCGAACACTTTTTGCAATA AAAACTCCTGAAGCTAGTTATCTGGAAGTTCCTGATCCTGATGAGGATATTGGTTCCCCACTATACAAAATGACAGTTAGAAGCACCAATGGACCCATTG ATGTGTATCTCTTGAGCAAATGCAAACAAGGTGAGGACATAACCGCGGAGCATGTTGAACCAATGGATACAAGTGCTTGGAACAGTAGCCAATGCAGAGA CCAGGATGCAGGGTTGCCTTCAGAGTGTCAGGGTAATCAAAACAGTTGTTGTGAACCATTCAGCTCACTAACTCTAGAAGCATCTGGGATTTGTAAGTTA ATTCCTGCAGACTGCAATATTATTGATGATTACTGGTTCACAACAGATGATTCAGTCAGCATTTCAAAATTGTGGGTTGATCGTATCTCTTAA
AA sequence Show only first row Show all	>Potri.002G023400.2 pacid=42777595 polypeptide=Potri.002G023400.2.p locus=Potri.002G023400 ID=Potri.002G023400.2.v4.1 annot-version=v4.1 MANASEDPNRTINPSQFHFHLLHSHSHFQNQNLFSSSNNSTPSNRLFPSSFRKPHHLPPPPPDNNKTPIGFQFHSSNTHSAFRDVALGIKSESDDHEVWT NRDAAFPAQSDIVTDITLAPRSSSGGKHKNKSRVPKHAKSVTQRMNAESLNGLNLASGCRYDSSLGLLTKKFVKLIKEAQDGTLDLNKTAEVLEVQKRRI YDITNVLEGIGLIEKTSKNHIRWKKEFDDCEQRMLDNHARIKAEVESLYTEEFRLEEAIRDRQELLRGLKEDVVCRKHLFLTEEDITSLSCFQNRTLFAI KTPEASYLEVPDPDEDIGSPLYKMTVRSTNGPIDVYLLSKCKQGEDITAEHVEPMDTSAWNSSQCRDQDAGLPSECQGNQNSCCEPFSSLTLEASGICKL IPADCNIIDDYWFTTDDSVSISKLWVDRIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.002G023400 [exp]	0	1	Pt-E2FC.1,E2Fc
AT2G39800		ATP5CS, P5CS1	delta1-pyrroline-5-carboxylate...		Potri.010G198400 [exp]	12.96	0.5716	Pt-P5CS.1
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	13.03	0.6315
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	27.42	0.5607
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	28.98	0.5186	Pt-TOPP1.1
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.005G215800 [exp]	29.46	0.5950
AT3G49990			unknown protein		Potri.005G234800 [exp]	29.89	0.6120
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Potri.001G334900 [exp]	30.46	0.5425
AT4G11790			Pleckstrin homology (PH) domai...		Potri.003G120900 [exp]	31.22	0.5805
AT1G72090			Methylthiotransferase (.1)		Potri.013G107800 [exp]	43.81	0.5555
AT1G69070			unknown protein		Potri.010G140100 [exp]	54.32	0.5505

Compare expression of checked genes

Potri.002G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.