Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42560 296 / 2e-100 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G19950 266 / 2e-88 HVA22H HVA22-like protein H (ATHVA22H) (.1) AT1G75700 257 / 6e-87 HVA22G HVA22-like protein G (.1) AT2G36020 197 / 3e-62 HVA22J HVA22-like protein J (.1) AT4G36720 60 / 1e-10 HVA22K HVA22-like protein K (.1) AT2G42820 51 / 1e-07 HVA22F HVA22-like protein F (.1) AT5G50720 50 / 1e-07 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 49 / 3e-07 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT1G74520 49 / 7e-07 ATHVA22A HVA22 homologue A (.1) AT1G69700 47 / 3e-06 ATHVA22C HVA22 homologue C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237900 [exp] 382 / 3e-134 AT5G42560 274 / 1e-91 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.004G166800 [exp] 239 / 9e-79 AT1G75700 234 / 3e-78 HVA22-like protein G (.1) Potri.006G205300 [exp] 213 / 1e-68 AT2G36020 228 / 1e-74 HVA22-like protein J (.1) Potri.016G072600 [exp] 202 / 3e-65 AT2G36020 210 / 9e-69 HVA22-like protein J (.1) Potri.009G113400 [exp] 71 / 1e-14 AT4G36720 241 / 1e-81 HVA22-like protein K (.1) Potri.007G029300 [exp] 66 / 2e-12 AT4G36720 252 / 2e-85 HVA22-like protein K (.1) Potri.015G062800 [exp] 54 / 2e-08 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.015G099700 [exp] 53 / 2e-08 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.012G101600 [exp] 52 / 2e-08 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024332 [exp] 306 / 2e-104 AT5G42560 330 / 9e-114 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10034519 [exp] 301 / 2e-102 AT5G42560 324 / 2e-111 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10033152 [exp] 293 / 4e-99 AT5G42560 328 / 7e-113 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10004215 [exp] 194 / 2e-62 AT2G36020 196 / 6e-64 HVA22-like protein J (.1) Lus10016974 [exp] 196 / 3e-62 AT2G36020 210 / 2e-68 HVA22-like protein J (.1) Lus10021299 [exp] 194 / 3e-61 AT2G36020 206 / 6e-67 HVA22-like protein J (.1) Lus10029419 [exp] 177 / 1e-54 AT2G36020 198 / 1e-63 HVA22-like protein J (.1) Lus10010093 [exp] 64 / 3e-12 AT4G36720 202 / 2e-66 HVA22-like protein K (.1) Lus10007215 [exp] 63 / 7e-12 AT4G36720 196 / 2e-64 HVA22-like protein K (.1) Lus10043186 [exp] 58 / 2e-10 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [poplar] [flax] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Potri.002G023500.2 pacid=42778670 polypeptide=Potri.002G023500.2.p locus=Potri.002G023500 ID=Potri.002G023500.2.v4.1 annot-version=v4.1 ATGATTGGATCATTTCTAACACGAGGGCTTGTGATGGTTTTTGGCTATGCTTATCCAGCGTATGAGTGCTATAAAACGGTCGAATTGAATAAGCCAGAGA TTGAGCAACTCCGATTTTGGTGCCAGTATTGGATTTTGGTGGCGGTTTTGACAGTTTGTGAGAGAATTGGAGATACTTTTATTTCATGGGTCCCAATGTA CAGTGAGGCTAAGTTGGCATTTTACATATACTTATGGTACCCTAAAACTAAGGGAACCTCCTATGTGTACGATTCCTTCTTCAAACCATATGTTGCGAAG CATGAGAATGAAATAGATCGCAGCTTGTTGGAGCTGAGGACTAGGGCTGGAGATATGGTTTTTGTATATTGGCAAAGAGCAGCAAGTTATGGTCAGACAA GAGTTTTTGAGATTTTGCAGTACATTGCTGCACAGTCAACAACAAGGCCTCGCCCTGCTCAGCCACAGCAGCAAGGTGCTAGGGCTCGCCAGCCTTCTGC TCCCAGCCGTCAACCTTCATCAAACCGTCAACCAGCTACGACACAAGCAGAGCCTGAAGTACCTCTATCTCCCACTCCTAGCACATCTTCAAGTCAGCAC AAAATGGAAGTAGAGGAAGAGGCAGGTCCTTCTAAAGTGCTTGAAGCAGCAGTTCCTGCAACAGCTTCAAATGCCCAAACAGCACCTGAAGTTTCCAGCC AACCTAAACCAACCGAGGAAGAAGCAATGGAGACTGAAGACGTGCCATCATCTTCAGAAAACAAAAACGAAGACCCTACACCAAAAGAAACTTTGATGGA GCAAAGAACCCGGGATACAAGTGTCAGATTGAGGAAAACCCATTCTGGAACAAACCGTTGA
AA sequence Show only first row Show all	>Potri.002G023500.2 pacid=42778670 polypeptide=Potri.002G023500.2.p locus=Potri.002G023500 ID=Potri.002G023500.2.v4.1 annot-version=v4.1 MIGSFLTRGLVMVFGYAYPAYECYKTVELNKPEIEQLRFWCQYWILVAVLTVCERIGDTFISWVPMYSEAKLAFYIYLWYPKTKGTSYVYDSFFKPYVAK HENEIDRSLLELRTRAGDMVFVYWQRAASYGQTRVFEILQYIAAQSTTRPRPAQPQQQGARARQPSAPSRQPSSNRQPATTQAEPEVPLSPTPSTSSSQH KMEVEEEAGPSKVLEAAVPATASNAQTAPEVSSQPKPTEEEAMETEDVPSSSENKNEDPTPKETLMEQRTRDTSVRLRKTHSGTNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.002G023500 [exp]	0	1
AT4G18372			Small nuclear ribonucleoprotei...		Potri.015G138100 [exp]	14.28	0.6026
AT2G18670			RING/U-box superfamily protein...		Potri.006G175700 [exp]	18.70	0.6002
AT5G05590		PAI2	phosphoribosylanthranilate iso...		Potri.014G188400 [exp]	37.14	0.4887
AT1G61700			RNA polymerases N / 8 kDa subu...		Potri.003G102900 [exp]	37.24	0.5179
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.017G112100 [exp]	43.55	0.5639
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	46.08	0.5572
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Potri.002G087700 [exp]	55.58	0.4538
AT4G18400			unknown protein		Potri.004G133260 [exp]	63.68	0.5102
AT4G00585			unknown protein		Potri.014G079800 [exp]	65.95	0.5020
AT3G14890			phosphoesterase (.1.2)		Potri.001G390500 [exp]	67.49	0.4994

Compare expression of checked genes

Potri.002G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.