Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75690 194 / 3e-64 LQY1 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT2G34860 41 / 0.0001 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2) AT2G24860 40 / 0.0001 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237800 [exp] 234 / 4e-80 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.006G266800 [exp] 39 / 0.0003 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G016400 [exp] 39 / 0.0004 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.001G009800 [exp] 39 / 0.0005 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002040 [exp] 181 / 6e-59 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10024330 [exp] 143 / 3e-44 AT1G75690 164 / 1e-52 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10026899 [exp] 38 / 0.0008 AT2G24860 154 / 6e-49 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G023600.2 pacid=42777970 polypeptide=Potri.002G023600.2.p locus=Potri.002G023600 ID=Potri.002G023600.2.v4.1 annot-version=v4.1 ATGCCAGTAGCGCCTTCCATCCCTCGTCTTCACTCACCATTTCTATGCTGCCCTCTTAACAATATCTCTTCTTCACTGTCATCCTTCAAGTCCGCGAGAC ATCATCCTCAACGGTCACCAGTGTCTTATCCATGCATCAGAGCTATTGATCTTGATCAGAACACGATAGTGGCAATTTCGGTCGGGGTCGTGAGCATTGC TGCTGGGATAGGAATTCCTGTTTTCTACGAATCCCAGATTGATAATGCTGCAAAGCGAGACAATACCCAGCCATGTTTCCCTTGCAGTGGCAGCGGTGCA CAAAAATGTAGATTTTGCCTGGGAACTGGCTCAGTGACAGTGGAGCTAGGTGGGGATGAAAAAGAAGTCTCTAGATGCATCAATTGCGACGGTATCGGTT CTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCCCGGTATCTAGATCGCAGAGAATTCAAGGATGATGATTGA
AA sequence Show only first row Show all	>Potri.002G023600.2 pacid=42777970 polypeptide=Potri.002G023600.2.p locus=Potri.002G023600 ID=Potri.002G023600.2.v4.1 annot-version=v4.1 MPVAPSIPRLHSPFLCCPLNNISSSLSSFKSARHHPQRSPVSYPCIRAIDLDQNTIVAISVGVVSIAAGIGIPVFYESQIDNAAKRDNTQPCFPCSGSGA QKCRFCLGTGSVTVELGGDEKEVSRCINCDGIGSLTCTTCQGSGIQPRYLDRREFKDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	0	1
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.001G450100 [exp]	2.44	0.9697
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	2.44	0.9773
AT2G05070		LHCB2.2	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.002G221400 [exp]	2.82	0.9722	2,Pt-LHCB2.1
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.001G407100 [exp]	3.74	0.9762	Lhcb3-1,LHCB3.2
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.003G020400 [exp]	4.89	0.9728
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.018G065300 [exp]	8.36	0.9715
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	9.38	0.9654	GC1.1
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.008G159400 [exp]	9.94	0.9652	Pt-APG1.1
AT3G15520			Cyclophilin-like peptidyl-prol...		Potri.001G404700 [exp]	11.31	0.9631
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	12.00	0.9642

Compare expression of checked genes

Potri.002G023600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.