Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19940 672 / 0 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G75680 671 / 0 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT4G11050 409 / 7e-137 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G64390 392 / 3e-130 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G32990 388 / 6e-130 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT4G23560 372 / 3e-124 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G48930 377 / 4e-124 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 371 / 9e-124 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT4G09740 370 / 2e-123 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT1G02800 369 / 1e-122 ATCEL2 cellulase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237700 [exp] 870 / 0 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G115400 [exp] 656 / 0 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.014G157600 [exp] 402 / 2e-135 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 391 / 5e-131 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.003G139600 [exp] 390 / 3e-129 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G092200 [exp] 389 / 7e-129 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 385 / 2e-127 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G098800 [exp] 374 / 2e-124 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.002G202400 [exp] 369 / 2e-122 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034515 [exp] 743 / 0 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10033156 [exp] 741 / 0 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10014265 [exp] 600 / 0 AT1G75680 584 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10025965 [exp] 582 / 0 AT1G75680 549 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10035316 [exp] 399 / 5e-134 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10009724 [exp] 398 / 1e-133 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10001833 [exp] 399 / 1e-132 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10017525 [exp] 395 / 1e-132 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10003888 [exp] 390 / 3e-129 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 389 / 6e-129 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.002G023900.1 pacid=42779300 polypeptide=Potri.002G023900.1.p locus=Potri.002G023900 ID=Potri.002G023900.1.v4.1 annot-version=v4.1 ATGAGAGTGAAACCAAGTTCTAGAGGTTGCTGTTGGTGGTTTTTGGTGGTAGTAACATTGGCATTGGTTTATGATGCCATTGTTTATACAGTCCAAAAGA AAACTGAGAAATCTGAAGGGGCTGCTCCTATTACAGGGCCTCCTGGTGCTATTGAGAAGAAATATGCTGATGCTCTCAAAATTGCTATGCAATTCTTTGA CATTCAAAGATCTGGCGAGTTGGGATATAGTAACAAGTTTAGTTGGAGAGGGGATTCAACTCTTACAGATGGAAGTCAAGCGAAATTGGATCTTTCAAAA GGCATGTATGATGCTGGGGATCTTATGAAGTTTGGTTTTCCAATGGCTTTTACTGCTACAGTACTTTCATGGGCCATCCTTGAGTATGGAGGTCAAATGG CTGTAGTGAATCAGTTGGATCCGGCACAAGATTCGCTCAAATGGATCACTGACTACCTTATCAATGCGCATCCTGAAGAGAATGTGCTCTACGTTCAAGT TGGTGACCCTGAAATTGATCATGGTTGTTGGGAAAGACCTGAAGTTATGAGTGAAAAGAGGCCCCTTACTCAGATTAATACATCTTCTCCTGGGACAGAA GTTGCAGCTGAAACTGCAGCAGCTTTGGCTTCAGCATCTTTGGTGTTTAAATCTGATTCCAGATATTCAAGCGCGCTGCTTAAGCATGCTAAAGAGTTGT TTACTTTTGCCGACAAATATAGAGGTTCTTATAGTGAAAGTATCCCAGAAGTTTCCACGTATTACAACTCAACAGGATACGGGGATGAGCTCTTGTGGGC AGCTAGTTGGCTCTATCATGCAACGGGGGATAAATCATATCTTCAGTATGTGACTGGGAAAAATGGTGAAGTCTTCGCACAATGGGGAAGTGCAACATGG TTCAGTTGGGATAACAAACTTGCAGGAACACAGGTTTTGCTGTCGAGACTAACTTTCTTTGGCAACAAAGACACCTCAAACTCAGGCCTTCAGATGTATA GGAAAACAGCCGAGGCTGTTATGTGCAGTCTCATCCCAGATTCTCCAACGGCCACACAGAGTAGAACAGATAGTGGTCTTATATGGGTCAGTGAATGGAA TGCTTTGCAGCATCCCGTTGCTTCTGCATTTTTAGCTTCTCTTTACAGCGATTACATGCGTAGTTCAGGAACTGCAAAGCTATCCTGCAATGGATATTCA TATAAACCATCAGATCTTCGGAAATTTGCTAAATCCCAGGCTGATTATGTCTTGGGAAATAATCCTATGAAGATGAGCTTTCTTGTTGGGTATGGCGAGA ATTATCCACAATATGTGCATCATAGGGGAGCTTCAATCCCAGCTGATGCAAAAACTGGTTGCAAAGATGGCTGGACATGGCTTGAAAGAAAGGAACCTAA TCCCAACGTAGCAACTGGAGCACTTGTTGGTGGTCCCTTCTTAAATGAAACATTTGTCGATGATCGCAACAATTCAATGCAGGCAGAGCCAACCACCTAT AACGGTGCTGTGATTGTTGGCCTCCTCTCAGGTCTTGTCACCACTTCTTCTGCAGTTCCATCTTTCACCTAA
AA sequence Show only first row Show all	>Potri.002G023900.1 pacid=42779300 polypeptide=Potri.002G023900.1.p locus=Potri.002G023900 ID=Potri.002G023900.1.v4.1 annot-version=v4.1 MRVKPSSRGCCWWFLVVVTLALVYDAIVYTVQKKTEKSEGAAPITGPPGAIEKKYADALKIAMQFFDIQRSGELGYSNKFSWRGDSTLTDGSQAKLDLSK GMYDAGDLMKFGFPMAFTATVLSWAILEYGGQMAVVNQLDPAQDSLKWITDYLINAHPEENVLYVQVGDPEIDHGCWERPEVMSEKRPLTQINTSSPGTE VAAETAAALASASLVFKSDSRYSSALLKHAKELFTFADKYRGSYSESIPEVSTYYNSTGYGDELLWAASWLYHATGDKSYLQYVTGKNGEVFAQWGSATW FSWDNKLAGTQVLLSRLTFFGNKDTSNSGLQMYRKTAEAVMCSLIPDSPTATQSRTDSGLIWVSEWNALQHPVASAFLASLYSDYMRSSGTAKLSCNGYS YKPSDLRKFAKSQADYVLGNNPMKMSFLVGYGENYPQYVHHRGASIPADAKTGCKDGWTWLERKEPNPNVATGALVGGPFLNETFVDDRNNSMQAEPTTY NGAVIVGLLSGLVTTSSAVPSFT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	0	1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	1.41	0.8754	MANS.2
AT1G27190			Leucine-rich repeat protein ki...		Potri.004G081700 [exp]	2.23	0.8207
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	2.44	0.8636
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G121400 [exp]	2.44	0.8157
AT5G46080			Protein kinase superfamily pro...		Potri.004G049200 [exp]	5.65	0.8100
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	6.92	0.7917
AT1G47740			PPPDE putative thiol peptidase...		Potri.014G042300 [exp]	8.12	0.7099
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.001G020600 [exp]	8.48	0.8286
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	9.94	0.8084
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Potri.003G087800 [exp]	10.48	0.7923	Pt-TOM2.1

Compare expression of checked genes

Potri.002G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.