Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XRN2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75660 1137 / 0 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 912 / 0 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G54490 464 / 7e-148 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237500 [exp] 1551 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.005G048900 [exp] 470 / 6e-150 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 452 / 8e-143 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 381 / 3e-114 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012434 [exp] 1249 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10024327 [exp] 1128 / 0 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 947 / 0 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10004119 [exp] 753 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 663 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10000941 [exp] 447 / 2e-142 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 448 / 2e-141 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10013326 [exp] 334 / 5e-99 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 267 / 1e-76 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 256 / 8e-75 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0280 [poplar] [flax] PIN PF03159 [poplar] [flax] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Potri.002G024100.3 pacid=42777470 polypeptide=Potri.002G024100.3.p locus=Potri.002G024100 ID=Potri.002G024100.3.v4.1 annot-version=v4.1 ATGGGAGTGCCGGCCTTTTATCGGTGGTTAGCGGAGAAGTATCCGTTAGTGGTGGTGGATGTGATCGAAGAAGAACCGGTTGTTATCGAAGGCGTTAAGA TTCCTGTGGATACAAGTAGACCTAACCCTAACAATATCGAGTATGATAATTTATATCTCGATATGAACGGGATTGTTCATCCTTGCTTTCATCCCGAAGA CAGACCTTCGCCTACTTCTTTCGATGAGGTATTTCAGTGTATGTTTGATTATATTGATAGGCTTTTTGTGGTGGTGAGGCCTCGGAAATTGCTGTACATG GCAATTGGTGAATGGAGTTGCACCTCGTACGAAATGAATCAGCAACGGTCTAGGCGTTTTAGGGCAGCTAAAGATGCAGCTGATGCGGCTGCTGAAGAAG AAAGGCTAAGAGAGGAGTTCGAGAGGGAGGGCAGGAAGCTTCCCCCTAAGGAGTCATCTCAAACTTTTGATTCCAATGTTATCACTCCTGGAACTGAATT TATGGCTGTTTTACTAAATTATGATCCTGGATGGAAGAAAATTAAGGCTATCCTTTCTGATGCAAATGTTCCCGGGGAAGGGGAACACAAAATCATGTCC TATATCCGTCTTCAAAGTAACCTTCCCGGTTATAATCCAAATACACGCCATTGCCTGTATGGTTTGGATGCAGATTTAATCATGTTGTCTCTGGCTACCC ATGAAGTTCTTTTTTCAATTCTTAGAGAGATTGTTTTCACTCCTGGACAACAAGACAAATGCTTCCTATGTGGTCAGATGGGTCATTTAGCAGCTGATTG TGAAGGAAAGGCGAAGAGAAAGGCAGGAGAATTTGATGAGAAAGGCAATGACGTTGCTGTGCCCAAAAAACCATACCAGTTTCTCAATATCTGGATTCTT AGAGAGTATTTGGAGTATGAATTCAGAATTCCTAATCCTCCATTTGAGATTGATCTTGAACGCATTGTAGATGATTTTATATTCATTTGTTTCTTTGTTG GCAATGATTTCCTGCCACACATGCCCACACTGGAGATTCGTGAGGGTGCAATCAACTTGCTGATGGCTGTTTATAAGAAGGAATTTAGGGTGCTTGATGG GTATTTGACTGATGGCAGCAAGCCTAATTTAAATAGAGTGGAACATTTTATTCAACCTGTGGGTTCATATGAAGATAAGATATTCCAGAAAAGAGCACGA TTGCACCAGCGTCAGGCAGAAAGAATTAAGCGTGAAAAGGCACAGGCAAGGAGAGGTGATGATGCAGAGCCTCAAAATCAACCTGAATCTTTGGTTGCAG TTGCCCGATTTCATGGCTCTCGTCTTGCTTCAGCTCCTACACCTTCACCATATCAGGATGATGGAACACATTCTCAGACATCTGATGGTAAACGATCCTC TGTTCGGAGGCATAAAGTTGCACGTTTGTCTTCAACAGCCAATATTGGTGCTGCCATTGTTGAGGCAGAGAATAGTCTGGAAATAGAAGTACATGAAAAC CAAGAAGAATTGAAAACTAAGCTTAAGGAGTTACTTCGTGAGAAATCTGATGTTTTTAACTCAAAGAATCATGGAGAAGACAAGGTCAAATTGGGAGAAC CAGGTTGGAAGGAAAGATATTATGAACAGAAGTTTTCTGCAAAAACTCTGGAGGAAATGGAAGATATACGGAGAGATGTTGTTTTGAGATATACAGAAGG GCTGTGTTGGGTCATGCATTATTATTATGAAGGTGTTTGTTCTTGGCAGTGGTTTTATCCCTATCACTATGCGCCCTTTGCTTCAGATCTCAAAGATCTT GGTCAACTGGACATTAGTTTTGAACTTGGTTCTCCATTCAAACCATTCAACCAGCTTTTGGGAGTTTTCCCTGCAGCAAGTTCCCATGCTCTCCCTGTAC ACTATAGGAAATTGATGACGGATCCAAGTTCACCTTTTATTGATTTTTATCCTACTGATTTTGAAGTGGACATGAATGGAAAGCGATATGCATGGCAGGG TATTGCAAAGCTTCCCTTAATTGATGAATCTCGCCTTCTTGCAGAGGTCCAAAAAATTGAGCACACATTAACGGAGGAAGAAGCAAGGAGAAACAGTATG ATGTTTGACATGCATTTTGTGTCATCATCTCATTCTCTCTCTGAGAGCATAAATTTACTCGATAATCATTGCAAACAATTAACAGACAAAGAACGAGCTG AAGTCAAGGAGCGTATCAATCCTGAGTTGAGTGATGGGATGAATGGCTATTTATCTCCTTGTGCTGGAGATACTCACCCTCCTATATTCAGGTCTCCAGT TGTAAGCATGGAAGACATTTTGGCCAATGAAGTCATATGTGTCATATACAGACTTCCTGATCCACACACACACATCACTCGTCCGCCTGCTGGTGTTATA TTCCCCAAAAAGACGGTAGATCAAGGTGATCTGAAACCTGAACCAATTTTATGGCATGAGGATTCTGGGAGGAGGCCTTGGGAGAATGACTGCTCCCTGC GGCCCACCACACTCTTCTATTCAAATGGGCTGCACAATCATGGACACTATGGAACTTTACAACCAGAAATAGATTATTCTCATGCAGGTTATCCCCGTTC TGCAAGTCCTCATATGCCAACTCACTATGACCATGGATATGGTTCGGCAGGTGCCAACCCCTCTTATAGAAGGTCCCGTCCTCAGAATGAAAGAGAGAAC CAAATGAGTGGGCCACATCCAAGGCACGTGTACCACCCACCTGAATTTCATCAGAATGGTAGACCAAGGTATCCACATGGGCCGGTGGAACATACGTCAA CTGGGACCTCAACATATGCTTATCAAGGTGGTTATGACGCCTATCAGAGTTACCAATCACCTGGAGCTGGTAGTCACCAGCAATGGGGTGGTAGGTTTCC CCCGCCTGCCAACCATAGCAATCCCAGCAGCAACCGATTTTCAGCACTGGATCATAGAGGAAATAAAATGCCACCACAACATGGTGGAGCAAATCGGAGA CCCCAGCCACCTCCTGGCAGTGCTAATCGGAGGCCCCATCCACCAGCTGGTTATGGTCGCCAATGA
AA sequence Show only first row Show all	>Potri.002G024100.3 pacid=42777470 polypeptide=Potri.002G024100.3.p locus=Potri.002G024100 ID=Potri.002G024100.3.v4.1 annot-version=v4.1 MGVPAFYRWLAEKYPLVVVDVIEEEPVVIEGVKIPVDTSRPNPNNIEYDNLYLDMNGIVHPCFHPEDRPSPTSFDEVFQCMFDYIDRLFVVVRPRKLLYM AIGEWSCTSYEMNQQRSRRFRAAKDAADAAAEEERLREEFEREGRKLPPKESSQTFDSNVITPGTEFMAVLLNYDPGWKKIKAILSDANVPGEGEHKIMS YIRLQSNLPGYNPNTRHCLYGLDADLIMLSLATHEVLFSILREIVFTPGQQDKCFLCGQMGHLAADCEGKAKRKAGEFDEKGNDVAVPKKPYQFLNIWIL REYLEYEFRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRVLDGYLTDGSKPNLNRVEHFIQPVGSYEDKIFQKRAR LHQRQAERIKREKAQARRGDDAEPQNQPESLVAVARFHGSRLASAPTPSPYQDDGTHSQTSDGKRSSVRRHKVARLSSTANIGAAIVEAENSLEIEVHEN QEELKTKLKELLREKSDVFNSKNHGEDKVKLGEPGWKERYYEQKFSAKTLEEMEDIRRDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDL GQLDISFELGSPFKPFNQLLGVFPAASSHALPVHYRKLMTDPSSPFIDFYPTDFEVDMNGKRYAWQGIAKLPLIDESRLLAEVQKIEHTLTEEEARRNSM MFDMHFVSSSHSLSESINLLDNHCKQLTDKERAEVKERINPELSDGMNGYLSPCAGDTHPPIFRSPVVSMEDILANEVICVIYRLPDPHTHITRPPAGVI FPKKTVDQGDLKPEPILWHEDSGRRPWENDCSLRPTTLFYSNGLHNHGHYGTLQPEIDYSHAGYPRSASPHMPTHYDHGYGSAGANPSYRRSRPQNEREN QMSGPHPRHVYHPPEFHQNGRPRYPHGPVEHTSTGTSTYAYQGGYDAYQSYQSPGAGSHQQWGGRFPPPANHSNPSSNRFSALDHRGNKMPPQHGGANRR PQPPPGSANRRPHPPAGYGRQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	0	1	XRN2.1
AT3G56120			S-adenosyl-L-methionine-depend...		Potri.018G072200 [exp]	3.46	0.8150
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	3.60	0.8803
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	3.74	0.8782
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	4.89	0.8458
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	8.94	0.8421
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	10.00	0.8283
AT2G27610			Tetratricopeptide repeat (TPR)...		Potri.004G184800 [exp]	10.67	0.8036
AT3G12590			unknown protein		Potri.008G052700 [exp]	10.95	0.8306
AT3G18310			unknown protein		Potri.012G041300 [exp]	11.22	0.8013
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	11.83	0.8312	Pt-ABA3.1

Compare expression of checked genes

Potri.002G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.