Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19920 758 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT3G22890 661 / 0 APS1 ATP sulfurylase 1 (.1) AT4G14680 658 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT5G43780 655 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237300 [exp] 886 / 0 AT1G19920 734 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Potri.008G159000 [exp] 665 / 0 AT3G22890 767 / 0.0 ATP sulfurylase 1 (.1) Potri.010G081200 [exp] 657 / 0 AT3G22890 758 / 0.0 ATP sulfurylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034513 [exp] 764 / 0 AT1G19920 744 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10033158 [exp] 760 / 0 AT1G19920 736 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10006629 [exp] 657 / 0 AT3G22890 769 / 0.0 ATP sulfurylase 1 (.1) Lus10039389 [exp] 540 / 0 AT4G14680 655 / 0.0 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01747 [poplar] [flax] ATP-sulfurylase ATP-sulfurylase CL0178 [poplar] [flax] PUA PF14306 [poplar] [flax] PUA_2 PUA-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G024200.1 pacid=42777937 polypeptide=Potri.002G024200.1.p locus=Potri.002G024200 ID=Potri.002G024200.1.v4.1 annot-version=v4.1 ATGTCTTTAACAATTAAACTAACCATATCTCCTCGCATAATTAACCTTAATTGTCACGAAAGAAACAGAACAAAATTCCCAGCAATCCGACCAAAACCAA TCTACCATTCAAACGCATTAAACCCTATTCTATACAACAACAAAAGACCCGGAATGATTCAAGCTTCTGTATCCGGTACAGTTATCAAGAGCTCCTTGAT TGAGCCAGATGGTGGGGTCTTGGTGGATGTTATAGTGCCAGAGAGCGAGAGGGGGTCAAAAACCTTGGAAGCAGAATCACTGCCTAAAGCGAGGCTGGCT AAGATTGATGTGGAGTGGGTTCATGTGATAAGTGAAGGATGGGCGAGTCCCTTGAAAGGGTTTATGAGGGAGAATGAGTATTTGCAGAGTTTGCATTTTA ATTCTTTGAGAATGGAAAATAGGACTGTTGTGAATATGTCGCTTCCTATTGTTTTGGCAATTGATGACGAGACCAAAGAGAGTATTGGGTCTTCAAAAGA TGTTGGATTGGTTGGTCCTGAGGGTGATTTGCTTGCTATTCTTCGAAGTATTGAGATATACAAGCATAACAAAGAAGAAAGAATAGCTAGAACATGGGGG ACAACTGCACCTGGATTGCCGTACGTTGAGGAATTCATTGCTCCAGCAGGAAATTGGCTCCTAGGTGGAGATCTAGAAGTGCTAAAGCCCATCAAATACA ATGATGGACTTGATCATTACAGGCTTTCTCCTAAACAACTCAGGAAGGAATTTGATAGGCGTCAAGCTGATGCAGTTTTTGCATTTCAGTTACGAAACCC CGTTCATAATGGGCATGCCTTATTGATGAATGATACACGCAGGCGGCTTTTGGAAATGGGTTATAAGAATCCGATTCTACTGCTTCATCCATTAGGAGGT TTCACAAAGGCTGATGACGTTCCTTTGGATGTTCGGATGGAACAACACAGCAAGGTTCTAGAAGATGGAGTTCTTGACCCTGAAACTACAATTGTTGCTG TATTCCCGTCACCTATGCATTATGCTGGTCCTACTGAAGTGCAATGGCATGCCAAGGCACGGGTAAATGCAGGTGCTAACTTTTACATTGTAGGTCGTGA TCCTGCTGGTATGGGTCACCCGACAGAGAAGAGAGATTTATATGACCCTGATCATGGAAAAAAGGTTCTAAGCATGGCTCAAGGTCTGGAGAAGTTGAAT ATTTTGCCATTTAGGGTGGCAGCATATGACACTGTGGCAAAGAAGATGGCATTTTTTGATCCATCTCGTTCCAAAGAGTTCCTCTTCATCTCTGGAACCA AGATGAGGGCCTATGCTAGAAATGGTGAGAACCCTCCTGATGGTTTTATGTGCCCTGGTGGTTGGGAAGTCCTCGTCAAATATTATGAGCAGTTGCAGGC CGAAGAGGCAATGCCAGTTGTTGCATCTGCTTAA
AA sequence Show only first row Show all	>Potri.002G024200.1 pacid=42777937 polypeptide=Potri.002G024200.1.p locus=Potri.002G024200 ID=Potri.002G024200.1.v4.1 annot-version=v4.1 MSLTIKLTISPRIINLNCHERNRTKFPAIRPKPIYHSNALNPILYNNKRPGMIQASVSGTVIKSSLIEPDGGVLVDVIVPESERGSKTLEAESLPKARLA KIDVEWVHVISEGWASPLKGFMRENEYLQSLHFNSLRMENRTVVNMSLPIVLAIDDETKESIGSSKDVGLVGPEGDLLAILRSIEIYKHNKEERIARTWG TTAPGLPYVEEFIAPAGNWLLGGDLEVLKPIKYNDGLDHYRLSPKQLRKEFDRRQADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVAVFPSPMHYAGPTEVQWHAKARVNAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAQGLEKLN ILPFRVAAYDTVAKKMAFFDPSRSKEFLFISGTKMRAYARNGENPPDGFMCPGGWEVLVKYYEQLQAEEAMPVVASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.002G024200 [exp]	0	1
AT5G13100			unknown protein		Potri.003G168300 [exp]	7.41	0.7256
AT3G16460		JAL34	jacalin-related lectin 34, Man...		Potri.017G010900 [exp]	8.12	0.7125
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	13.82	0.7832
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	14.00	0.7425	FAH1.2
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074800 [exp]	27.96	0.7022
AT2G34590			Transketolase family protein (...		Potri.017G076500 [exp]	27.96	0.6801	PDH.1
AT1G12640			MBOAT (membrane bound O-acyl t...		Potri.003G121700 [exp]	30.82	0.6702
AT3G56950		SIP2;1, SIP2	small and basic intrinsic prot...		Potri.016G024900 [exp]	36.74	0.6844	Pt-SIP2.1
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	36.76	0.7087
AT5G03870			Glutaredoxin family protein (....		Potri.016G079400 [exp]	43.68	0.6340

Compare expression of checked genes

Potri.002G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.