Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19835 941 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 893 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 625 / 0 Plant protein of unknown function (DUF869) (.1) AT2G23360 251 / 1e-69 Plant protein of unknown function (DUF869) (.1) AT3G05270 145 / 6e-36 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 130 / 4e-31 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 108 / 6e-24 Plant protein of unknown function (DUF869) (.1) AT2G24470 81 / 4e-18 Plant protein of unknown function (DUF869) (.1) AT3G19370 83 / 6e-16 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237100 [exp] 1755 / 0 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 290 / 5e-82 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 285 / 2e-80 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 231 / 7e-63 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 224 / 1e-60 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.007G098500 [exp] 150 / 2e-37 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 149 / 3e-37 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 149 / 8e-37 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 148 / 1e-36 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024324 [exp] 1152 / 0 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 1146 / 0 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 1140 / 0 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 1001 / 0 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 670 / 0 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034510 [exp] 450 / 2e-147 AT1G19835 343 / 5e-108 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10004994 [exp] 223 / 2e-59 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10029679 [exp] 148 / 2e-36 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 147 / 3e-36 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 142 / 8e-35 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [poplar] [flax] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Potri.002G024400.3 pacid=42779804 polypeptide=Potri.002G024400.3.p locus=Potri.002G024400 ID=Potri.002G024400.3.v4.1 annot-version=v4.1 ATGGATCGCCGGAGTTGGCCTTGGAAGAAAAAATCATCCGACAAGACTGAGAAAGCGGCTCCCGCAGAAGACTCCGGTGGATCACAGGGAGAGAAGGATA GCTATAAAAAACCCAACTACGTTCAAATTTCTGTGGAATCATATACCCACCTGACTGGTTTAGAGGATCAAGTGAAGACATATGGGGAACAGGTTGAAAC ACTAGAGGATCAGATCATGGACTTGAATGAAAAGCTGTCTGCAGCCCATTCAGAGATGACTACCAAGGAAAACCTGGTGAAACAACATGCTAAAGTTGCT GAAGAAGCTGTCTCGGGTTGGGAAAAGGCTGAGGCTGAAGCTTTGGCATTGAAAAATCATCTAGAAACAGTTACACTCTCAAAGCTCACTGCTGAAGATC GGGCATCACATTTGGATGGTGCTCTCAAAGAGTGCATGCGGCAGATAAGAAATCTAAAAGAAGAACATGAACAGAAAGTGCAGGATGTTGTACTCAACAA GAAAAAGCAATTAGACAAAATTAAGATGGATTTTGAAGCAAAGATTGGTAACTTGGATCAAGAGCTCCTTAGGTCTGCTGCTGAAAATGCTGCACTTTCA AGGTCATTGCAAGAGCGTTCTAATATGCTAATCAAAATAAGTGAAGAAAGGTCGCAAGCTGAGGCTGACATTGAGCTTTTGAAGAGCAATATTGAGTCAT GTGAAAGGGAAATAAATTCACTTAAATATGAACTCCATGTAACTTCTAAAGAGCTGGAGATTCGTAATGAAGAAAAGAATATGATCATGAGATCTGCTGA AGCAGCTAACAAGCAGCATACAGAGGGTGTCAAAAAAATAGCTAAGCTGGAAGCAGAGTGCCAAAGATTACGCGGTCTTGTTCGGAAGAAATTGCCAGGT CCTGCTGCACTTGCCCAGATGAAGCTAGAGGTTGAGAGTTTGGGTCGGGATTATGGAGACTCTCGACTGAGGAGGTCTCCTGTTAAGCCTCCAAGTCCTC ATTTGTCCTCAGTGCCTGAATTTTCACTGGACAATGTACAGAAATTCAACAAAGAGAATGAGTTTCTCACAGAGCGTTTATTTGCAGTGGAGGAGGAAAC AAAGATGTTGAAAGAAGCTTTGGCAAAGCGTAACAGTGAACTGCAGGCTTCAAGGAATCTGTGTGCTAAGACAGCAAGCAAGCTTCAAAGTTTAGAAGCT CAATTTCAACTCAACAATCATCAGAAAAGCTCCCCAAAATCTATCACTCAGGTTCCTGCTGAAGGTTACTCTAGTCAAAATATCAGTAACCCACCTAGCT TAACCTCTGTGTCTGAAGATGGAAATGATGATACCCAAAGTTGTGCTGACTCTTGGGCAACGACATCAGTCTCCGATGTTTCCCATTTCAAGAAGGACAA TCACAGTGAGAAGTCAAATAAGGCTGAAAATGCAAAGCACCTTGAACTTATGGATGACTTCTTGGAGATGGAGAAGTTGGCTTGTTTAAATGCAGATAGT GCCACTACCATTTCAAGTTCTCCAAACAATAAGGCTTCTGAAACTGCAAACACTGATGCTTTGGCTGAGGTCTCCTTGCAAAAAGAAGATGCACTGTCTG AAGAGAAGCGTGATTTGGATCCACTGGCGAATCACGTGTCTTGCAATAAGGATTCTTCAGCCATAAACTCAGGATCTGATGCTGATCTGTTGTCATTTGG GAAACTCCAGTCTAGAATCTCTATGTTACTTGAGTCTGTGTCGAAGGAGGTTGATGTGGATAAAATTTTGGAAGAAATTAAGCAGGTTGTGCATGATGCA GAAACCGCAGCAAGCTGTGGTTCCAAGGAAGTACACCATTCCGATGCAACGTGCGACAGGCAAACTTGTCCTGAAGATGCTGTTATAATGGGAGAGAAGG AAATCACATTGTTGCAAGAGAATAAGGCAGCCACACACACTATGCACACAGTAAGCGAGGAGTTGTTGGCTGCCATTTCTCAGATTCATGACTTCGTACT ATTGCTGGGAAAAGAAGCAATGGCAGTTCATGACACTTCTTGCGATAGCATTGGTCTGAGCCAAAAAATTGAGGAGTTCTCAATTACATTCAAGAAAGTT TTATGCAGTGACAGAAGCCTGATTGATTTCATGTTTGACCTTTCTCGTGTATTAGCAGTAGCCAGTGGGCTCCGATTCAATGTCCTAGGATATAAATGCA ATGAGGCGGAAATCAATAGTCCTGATTGCATAGATAAGGTTGCTTTACCAGAGAACAAGGTCATTCAAAATGATTCACCGGGAGAAACATTTCAGAATGG TTGTGCCAACATTTCCAGTCCGACCTCTAACCCGGAGGTGCCTGATTATGGAAATTTGGTACCTGGCTATGGATCAAATACCACATCGTGCAAGGTCTCA TTGGAAGAGTTTGAAGAATTGAAATCAGAGAAGGACACAATGGCCATGGATCTAGCTAGATGTACTGAAAATCTTGAAATGACAAAATCTCAATTACATG AAACCGAGCAGCTTCTAGCTGAAGTTAAATCACAACTGGTTTCTGCACAAAAGTCTAACAGCTTGGCTGAGACACAGCTCAAATGTATGGCAGAGTCATA TAGGTCGCTTGAAACACGTGCACAGGAGTTGGAAACTGAGGTAAACCTTCTGCGGGTGAAAACAGAAACTTTGGAAAGTGAGCTTCAAGAAGAAAAGACG AGTCATCAGGATGCCTTGACCAGATGCAAAGAACTAGAAGAGCAACTGCAAACGAAAGAGAGCTCGTCAGCGGATGGCATTGACCTCAAGAGCAAACAGG AGAAAGAAATAACAGCTGCCGCAGAAAAGCTAGCAGAGTGCCAGGAGACTATATTTCTTCTTGGCAAGCAGTTAAAATATTTGCGTCCGCAAACAGAGAT CATGGGATCTCCTTACAGTGAGAGGAGTCAAAGTGGCGATGGGATTGCCAAAGACGAACCTACTATAAGTGGCATTAACTTGCAGGATTCTGATCAAGCT GAGATGGACACAGGTGCTTCTGTTAATTTCCTCAAAGCAGGTAGTGAATCTCCATCGGATTCATACAACCATCCATGCTATCCATCTGATACAGAGTCAA ACCTCTTGAGATCACCGGTTGGCTTAAAGCATCCAAAACACAGGCCTACAAAATCAACCTCCTCATCTTCATCTTCTACCCCCACGCCAGAGAAACACCC TCGAGGGTTTAGCAGGTTCTTTTCCTCGAAAGGGAAGAATGGACATGGTTACTAG
AA sequence Show only first row Show all	>Potri.002G024400.3 pacid=42779804 polypeptide=Potri.002G024400.3.p locus=Potri.002G024400 ID=Potri.002G024400.3.v4.1 annot-version=v4.1 MDRRSWPWKKKSSDKTEKAAPAEDSGGSQGEKDSYKKPNYVQISVESYTHLTGLEDQVKTYGEQVETLEDQIMDLNEKLSAAHSEMTTKENLVKQHAKVA EEAVSGWEKAEAEALALKNHLETVTLSKLTAEDRASHLDGALKECMRQIRNLKEEHEQKVQDVVLNKKKQLDKIKMDFEAKIGNLDQELLRSAAENAALS RSLQERSNMLIKISEERSQAEADIELLKSNIESCEREINSLKYELHVTSKELEIRNEEKNMIMRSAEAANKQHTEGVKKIAKLEAECQRLRGLVRKKLPG PAALAQMKLEVESLGRDYGDSRLRRSPVKPPSPHLSSVPEFSLDNVQKFNKENEFLTERLFAVEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEA QFQLNNHQKSSPKSITQVPAEGYSSQNISNPPSLTSVSEDGNDDTQSCADSWATTSVSDVSHFKKDNHSEKSNKAENAKHLELMDDFLEMEKLACLNADS ATTISSSPNNKASETANTDALAEVSLQKEDALSEEKRDLDPLANHVSCNKDSSAINSGSDADLLSFGKLQSRISMLLESVSKEVDVDKILEEIKQVVHDA ETAASCGSKEVHHSDATCDRQTCPEDAVIMGEKEITLLQENKAATHTMHTVSEELLAAISQIHDFVLLLGKEAMAVHDTSCDSIGLSQKIEEFSITFKKV LCSDRSLIDFMFDLSRVLAVASGLRFNVLGYKCNEAEINSPDCIDKVALPENKVIQNDSPGETFQNGCANISSPTSNPEVPDYGNLVPGYGSNTTSCKVS LEEFEELKSEKDTMAMDLARCTENLEMTKSQLHETEQLLAEVKSQLVSAQKSNSLAETQLKCMAESYRSLETRAQELETEVNLLRVKTETLESELQEEKT SHQDALTRCKELEEQLQTKESSSADGIDLKSKQEKEITAAAEKLAECQETIFLLGKQLKYLRPQTEIMGSPYSERSQSGDGIAKDEPTISGINLQDSDQA EMDTGASVNFLKAGSESPSDSYNHPCYPSDTESNLLRSPVGLKHPKHRPTKSTSSSSSSTPTPEKHPRGFSRFFSSKGKNGHGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	0	1
AT3G01860			unknown protein		Potri.010G058700 [exp]	1.00	0.9208
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	7.54	0.8833	Pt-CIP7.1
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	10.09	0.8837
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	12.96	0.8718
AT3G56590			hydroxyproline-rich glycoprote...		Potri.016G029100 [exp]	15.16	0.8112
AT5G42710			unknown protein		Potri.014G185300 [exp]	15.49	0.8621
AT5G14230			unknown protein		Potri.001G333600 [exp]	15.49	0.7950
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	16.61	0.8331
AT5G24320			Transducin/WD40 repeat-like su...		Potri.012G018200 [exp]	18.97	0.7986
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	19.59	0.8562

Compare expression of checked genes

Potri.002G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.