Plant FIBer expression Database

Potri.002G024601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75670 228 / 5e-76 DNA-directed RNA polymerases (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G236800
[exp]
383 / 1e-136 AT1G75670 236 / 2e-79 DNA-directed RNA polymerases (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040478
[exp]
240 / 1e-79 AT1G75670 230 / 3e-76 DNA-directed RNA polymerases (.1.2)
Lus10011283
[exp]
236 / 7e-74 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G024601.1 pacid=42778785 polypeptide=Potri.002G024601.1.p locus=Potri.002G024601 ID=Potri.002G024601.1.v4.1 annot-version=v4.1
ATGGAGGGATTGAGCAAATCGGTAGCCGATTTGATAGTTTACGAGCATCCATCGCAGAGCAAGGATGTCGACAAAGCAATCCTCCGTGAACTCAGCTCTC
TCCTCTTCAAATATTCTCAGGCTTTCGATGGAGTTGTACTGGCTTACAGTGTTGAGCCTCAAGATAAATGTGCGAGAATTCTCTCTGGGGTTCACCCTTA
TCTTGGTGTCAGACTACAAGCAAACATGTTAATCTTCTCGCCGAAGCCGAACATGCTTTTAGAGGGGAAGGTGGTGAAGCTTACGCGGGAATCTATTCAT
TGCATTGTTCTTGGTTTCTCATCTGCAATTGTAACAGATGAAAATATCCGCAACGAGTTAAAGTATAAATCTAAACATGGCGAGGGGGTATATGTGAGCA
GATATCACAAGCGACATGTGATAAAGGTTGGAGCTGTGCTACGTTTTGTTGTCAAGAGCTTGGATGAGGAAATACTACACATTTCAGGATCCTTGATTCC
AGCCAATACTGGAAGTGTTCATTGGTTGGATAAATATTATGTGGATGCTGGAACTGACAGTAACAAGAAGGCAAGGAGACAGATTGAGGAAGAAGTTGAA
ATGCAAGAGCAGGTCATTGTAGGCGGAGAGACATTGCCTTTGGTTAATGACCACGAAGTCAAGAGGTCAAAGAAACGTAGAAGAGCAGAAGATCAATGA
AA sequence
>Potri.002G024601.1 pacid=42778785 polypeptide=Potri.002G024601.1.p locus=Potri.002G024601 ID=Potri.002G024601.1.v4.1 annot-version=v4.1
MEGLSKSVADLIVYEHPSQSKDVDKAILRELSSLLFKYSQAFDGVVLAYSVEPQDKCARILSGVHPYLGVRLQANMLIFSPKPNMLLEGKVVKLTRESIH
CIVLGFSSAIVTDENIRNELKYKSKHGEGVYVSRYHKRHVIKVGAVLRFVVKSLDEEILHISGSLIPANTGSVHWLDKYYVDAGTDSNKKARRQIEEEVE
MQEQVIVGGETLPLVNDHEVKRSKKRRRAEDQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75670 DNA-directed RNA polymerases (... Potri.002G024601
[exp]
0 1
AT4G22000 unknown protein Potri.012G015800
[exp]
26.00 0.8271
AT1G26740 Ribosomal L32p protein family ... Potri.008G090100
[exp]
29.24 0.8535
AT2G20490 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST ... Potri.002G036500
[exp]
32.40 0.7875
AT2G20710 Tetratricopeptide repeat (TPR)... Potri.016G063400
[exp]
33.27 0.8415
AT5G54580 RNA-binding (RRM/RBD/RNP motif... Potri.011G130300
[exp]
33.67 0.8061
AT3G10350 P-loop containing nucleoside t... Potri.008G037100
[exp]
36.94 0.8360
AT4G24175 unknown protein Potri.005G240800
[exp]
41.83 0.8471
AT5G64650 Ribosomal protein L17 family p... Potri.007G107100
[exp]
48.16 0.8061
AT2G32650 RmlC-like cupins superfamily p... Potri.014G156900
[exp]
53.94 0.8406
AT2G38730 Cyclophilin-like peptidyl-prol... Potri.001G030000
[exp]
57.96 0.8081

Potri.002G024601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.