Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19850 1032 / 0 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G30330 499 / 5e-162 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 493 / 5e-162 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19220 499 / 1e-160 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 486 / 8e-155 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT5G62000 377 / 2e-116 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 348 / 4e-108 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 336 / 6e-104 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G60450 338 / 1e-102 ARF ARF4 auxin response factor 4 (.1) AT3G61830 330 / 1e-101 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236700 [exp] 1666 / 0 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.005G207700 [exp] 511 / 4e-167 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 511 / 6e-167 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 504 / 2e-165 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 501 / 2e-164 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.006G077800 [exp] 509 / 6e-164 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 508 / 6e-163 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.011G091900 [exp] 499 / 8e-163 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.018G145800 [exp] 503 / 8e-162 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012421 [exp] 1196 / 0 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10024320 [exp] 784 / 0 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10033597 [exp] 504 / 1e-164 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10031354 [exp] 500 / 3e-164 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 499 / 8e-164 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 498 / 2e-163 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 505 / 6e-163 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10007386 [exp] 494 / 2e-161 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 498 / 1e-160 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10020804 [exp] 476 / 2e-152 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.002G024700.1 pacid=42778221 polypeptide=Potri.002G024700.1.p locus=Potri.002G024700 ID=Potri.002G024700.1.v4.1 annot-version=v4.1 ATGGGTTCTGCTGAAGAGAAAATCAAAACAGGAGGGATTATTAATGGAGCTCAAACAAATCTGCTCGAGGAAATGAAGCTGTTGAAAGAATTTCAAGACC AGTCTGGGACACGGAAGGCAATAAACTCGGAGCTGTGGTACGCTTGTGCAGGTCCGCTAGTTTCCTTGCCCCAGGTTGGAAGTCTGGTGTATTATTTCCC TCAAGGACACAGTGAGCAGGTGGCCGTTTCCACTAAGAGATCAGCTACTTCACAGATTCCCAACTACCCAAATCTCCCTTCTCAGTTACTGTGCCAAGTT CACAATGTTACCCTTCATGCAGACAAAGATACAGATGAAATCCATGCTCAAATGAGTCTTCAACCAGTGAACTCTGAAAAAGACGTCTTCCCTGTACCAG ATTTTGGGCTAAAGCCCAGCAAGCATCCGAGTGAATTTTTCTGCAAAGCTTTGACCGCTAGTGATACAAGTACACATGGTGGGTTCTCAGTGCCACGCAG GGCAGCAGAAAAGCTCTTCCCTCCATTGGATTACTCAATGCAACCACCATCTCAGGAGCTTGTTGTCAGGGACTTGCATGATAATACCTGGACATTTCGC CATATATACCGCGGGCAGCCAAAGCGACACCTTCTTACAACTGGGTGGAGCTTATTTGTTGGTTCAAAAAGGCTTAAAGCAGGTGATTCTGTTCTGTTTA TCAGGAATGAAAAGTCCCACTTGATGGTGGGTGTGAGGCATGCAAACCGTCAACAAACAACATTACCATCATCAGTTCTATCTGCTGATAGCATGCACAT TGGTGTCCTTGCTGCTGCAGCTCATGCTGCTGGCAATCGAAGCCCATTCACCATTTTTTACAATCCAAGGGCATGCCCTTCAGACTTTGTCATTCCATTG ATTAAATTCCGGAAAACTGTATTTGGGACTCAAGTCTCAGTTGGTATGAGATTTGGAATGATGTTTGAGACAGAAGAGTCTGGAAAACGCAGATATATGG GCACAATAGTTGGTATTAGTGACTTAGATCCATTGAGGTGGCCTGGTTCCAAGTGGCGGAATCTTCAGGTAGAGTGGGATGAGCCTGGGTGTTCTGATAA GCAGAACAGGGTTAGTTCATGGGAAATTGAGACTCCTGAAAGTCTCTTTATTTTTCCCTCTCTGACTTCTGGTCTCAAACGACCCTTGCAGTCTGGATTT TTAGGAGATACTGAATGGGGGGGTTTGGTTAAAAAGCCTCTTGCATTGCTTCCAGGGAGTGGAAATGCAAGTCTTCCATATGCTTCAATGTCAAACATGT ATTCTGAACAACTGATTAACATGCTAATGAAACCTCAAGCTGTTAACTATCCTGGAATCTGTGGAACTGCACTACCAGAAGTATCTGCTGTGAAGGTGGG TTCATTAGATGTTAAGAACATGCAGGCAGCAATTAATCAGACGCCTCAGCTAAACCAGTCAGGAATTACGCCCATAGAAAACCAAAACTATTCCCAGATC TGTCTAGACCAATCCAATGCCATGAACTCATATTCATCAAAAGCAAATGTAGCTGGGAAGTCACTTTCTTTGAGCAAAGTTGAAAATCAAGCGTCAGTTG GAGGAGTTGATGGGAAATTCAAAGCAAAACCTGAGCATTTGCCAGATCAGTTAAGCCAGCCAACCTCAACAGGAGAGTGCATTGTGCAAAAACCAATCTC GTGTCCTATGACTCAGCAGAATGCCACAAATCATCTGGTGTTCCAAAATCAGAATCAGGGCCAGTCACAATTACAAGCCAGCCTCTGGCCTATGCAGGCA CTTGCAGAGTCATCGCTACTTAATTCCCAACAGATCCGTGCATCTCTAGCTGATGCCACTACACCAAACTGCTCTCTTCCATTTCTAGACGCAGGCGAAT GGATATCACATCCAATGTCTATTGACAGTATGTGTAGATCAGGACCGTTGTCTATGTTTGGATTACAAGATCCCTCTTTACCTTTTATGCATCAAGATGC GTGGGATCATCAGATGAGCAATTTGAGAATTTTATCTGAAGCGAACCAATTGATTCCTTTGGCTCAGCAAGAGCCATGTAGCTTCAACTCAGGTGCAGTG AAGGATTCATCTGACGAGAGCAATGATCAAAGTGGAATTTATGGTTCTCTTAACATTGATGCTAGCAATGGTGGTGGTTCTGTGTATGATCGGTCTGTCT CAAGTGCTATTCTAGATGAGTTCTGCACATTAAAGGATGCTGATTTGCAGAATGCTTCAGATTGTCTAGTTGGCAACCTCAGCTCAAGCCAGGATGTTCA GTCTCAGATTACCTCAGCAAGCCTAGCAGATTCCCAAGCTTTCTCACGGCAAGACTTTCCTGACAACTCAGGTGGCACATCTTCAAGCAACATTGAATTT GATAATAGCAATCTGCTCCAGAATAACTCATGGCAGCAAGTAGCCCCACGTGTGCGCACATATACCAAGGTTCAGAAGACAGGGTCTGTTGGGAGGTCAA TTGATGTCTCAAGTTTCAAAAATTATGAAGAACTATGCTCCGCTATTGAATGCATGTTTGGACTTGATGGGCTGCTAAATAACCCTAAAGGTTCTGGGTG GAAATTAGTATATGTGGACTACGAGAATGATGTTCTACTCATAGGTGATGATCCTTGGGAGGAATTCGTTGGCTGTGTTCGCTGCATTAGGATTCTGTCA CCTTCAGAAGTTCAGCAGATGAGTGAGGAGGGAATGAAGCTTCTCAACAGCGCCAACATCCAAGGCATCAATACCCCCATCACAGAGGGTATCCATGCTT GA
AA sequence Show only first row Show all	>Potri.002G024700.1 pacid=42778221 polypeptide=Potri.002G024700.1.p locus=Potri.002G024700 ID=Potri.002G024700.1.v4.1 annot-version=v4.1 MGSAEEKIKTGGIINGAQTNLLEEMKLLKEFQDQSGTRKAINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQV HNVTLHADKDTDEIHAQMSLQPVNSEKDVFPVPDFGLKPSKHPSEFFCKALTASDTSTHGGFSVPRRAAEKLFPPLDYSMQPPSQELVVRDLHDNTWTFR HIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRNEKSHLMVGVRHANRQQTTLPSSVLSADSMHIGVLAAAAHAAGNRSPFTIFYNPRACPSDFVIPL IKFRKTVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCSDKQNRVSSWEIETPESLFIFPSLTSGLKRPLQSGF LGDTEWGGLVKKPLALLPGSGNASLPYASMSNMYSEQLINMLMKPQAVNYPGICGTALPEVSAVKVGSLDVKNMQAAINQTPQLNQSGITPIENQNYSQI CLDQSNAMNSYSSKANVAGKSLSLSKVENQASVGGVDGKFKAKPEHLPDQLSQPTSTGECIVQKPISCPMTQQNATNHLVFQNQNQGQSQLQASLWPMQA LAESSLLNSQQIRASLADATTPNCSLPFLDAGEWISHPMSIDSMCRSGPLSMFGLQDPSLPFMHQDAWDHQMSNLRILSEANQLIPLAQQEPCSFNSGAV KDSSDESNDQSGIYGSLNIDASNGGGSVYDRSVSSAILDEFCTLKDADLQNASDCLVGNLSSSQDVQSQITSASLADSQAFSRQDFPDNSGGTSSSNIEF DNSNLLQNNSWQQVAPRVRTYTKVQKTGSVGRSIDVSSFKNYEELCSAIECMFGLDGLLNNPKGSGWKLVYVDYENDVLLIGDDPWEEFVGCVRCIRILS PSEVQQMSEEGMKLLNSANIQGINTPITEGIHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.002G024700 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120600 [exp]	3.60	0.8405
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145532 [exp]	10.77	0.8269
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	13.63	0.8215
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385300 [exp]	14.14	0.8309
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	14.42	0.8154
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	14.66	0.8235
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	17.74	0.8277
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	20.97	0.8025
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	21.93	0.7986
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	24.39	0.8208

Compare expression of checked genes

Potri.002G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.