Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39590 414 / 6e-143 TLD-domain containing nucleolar protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236400 [exp] 526 / 0 AT5G39590 639 / 0.0 TLD-domain containing nucleolar protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012406 [exp] 437 / 4e-152 AT5G39590 657 / 0.0 TLD-domain containing nucleolar protein (.1) Lus10024317 [exp] 422 / 2e-146 AT5G39590 643 / 0.0 TLD-domain containing nucleolar protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [poplar] [flax] TLD TLD
Representative CDS sequence Show only first row Show all	>Potri.002G025032.1 pacid=42779810 polypeptide=Potri.002G025032.1.p locus=Potri.002G025032 ID=Potri.002G025032.1.v4.1 annot-version=v4.1 ATGTTGACAACAGTGCCTAACCTCACGGAGTGTTTTACACAATTTGTCAATGCAAGACTGCAAAACTTCGCTAGTTCAGAGCAAGATGTGCTGGAATCTT CAAACTCATCATCAAGAGAAATCTCTCCAGAAAAGGCGTGCAGCTCCTACCTTCTAACCTGTGGAAGAGCGTGGGGAATTTCCCTTACTATCAGGGGTAC AATAAGTGAAGAAATTTTGAAACCGTACTTTCCTAGTGACAGTGATACTAAAGATGAAAATCTTCTTTATCGGTCATCTCTCCATGGGAAGGGCTTGAAC AGATTTTGGTCTAACATCGAAGGTTATCTTGGTCCGTTGCTCCTTCTAATTTCTGCTACTGGAGATGCACAAGAAGATAGCACCAATATTAGGAAATGGA TCATATGTGCACTCACGCACCAGGGTTTTGAAAACAGGGATATGTTCTATGGAAATTCTGGAACCCTATATGCTATATGTCCAGTCTTTCATGCGTTCTC ACCTTCTGGGAAGGAGAGAAACTTTGTTTACAGCCACTTGCATCCTACTGGTAGAGTTTATGAGCCACATCCAAAGCCCGTGGGCATTGTATTTGGGGGA ACCAATGGGAATGAGAGAGTTTATATGGATGAAGACTTTGCCAAAGCTACCGTGCGTCATCACGCTATTGACAAAACATACCATCACGGGCCCCTTTTCC CAAATCAGGGGTTTCTCCCGGTTGAAGCTTTGATTTTAGAGGTTGAAGTTTGGGGTTTAGGTGGGAGGAAAGCAAGGGAGATTCAACTTTCATATAAGAA GAGAGAGGACCTTTTCACTGAACAAAGACGCAAGGTTGACTTGAAAACTTTTGCAAGTTGGGAGGACTCACCTGAGAAGATGATGATGGATATTATTGCT GACCCTAACAGAGTTCAAAGGGAAGACCGCTGA
AA sequence Show only first row Show all	>Potri.002G025032.1 pacid=42779810 polypeptide=Potri.002G025032.1.p locus=Potri.002G025032 ID=Potri.002G025032.1.v4.1 annot-version=v4.1 MLTTVPNLTECFTQFVNARLQNFASSEQDVLESSNSSSREISPEKACSSYLLTCGRAWGISLTIRGTISEEILKPYFPSDSDTKDENLLYRSSLHGKGLN RFWSNIEGYLGPLLLLISATGDAQEDSTNIRKWIICALTHQGFENRDMFYGNSGTLYAICPVFHAFSPSGKERNFVYSHLHPTGRVYEPHPKPVGIVFGG TNGNERVYMDEDFAKATVRHHAIDKTYHHGPLFPNQGFLPVEALILEVEVWGLGGRKAREIQLSYKKREDLFTEQRRKVDLKTFASWEDSPEKMMMDIIA DPNRVQREDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39590			TLD-domain containing nucleola...		Potri.002G025032 [exp]	0	1
AT1G44760			Adenine nucleotide alpha hydro...		Potri.002G084600 [exp]	1.00	0.9631
AT1G20950			Phosphofructokinase family pro...		Potri.010G106950 [exp]	1.41	0.9576
AT3G13440			S-adenosyl-L-methionine-depend...		Potri.001G073700 [exp]	2.82	0.9500
AT3G09780		CCR1, ATCRR1	CRINKLY4 related 1 (.1)		Potri.006G128350 [exp]	3.16	0.9464
					Potri.008G105401 [exp]	7.74	0.8856
AT3G15160			unknown protein		Potri.011G135800 [exp]	9.89	0.8631
AT2G25740			ATP-dependent protease La (LON...		Potri.006G236400 [exp]	11.22	0.8993
AT5G48970			Mitochondrial substrate carrie...		Potri.010G024100 [exp]	12.88	0.8687
AT3G48480			Cysteine proteinases superfami...		Potri.015G090800 [exp]	13.49	0.9115
AT5G47720			Thiolase family protein (.1.2....		Potri.006G004400 [exp]	14.10	0.8211

Compare expression of checked genes

Potri.002G025032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.