Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19870 315 / 3e-95 IQD32 IQ-domain 32 (.1) AT1G18840 95 / 5e-20 IQD30 IQ-domain 30 (.1.2) AT1G74690 90 / 2e-18 IQD31 IQ-domain 31 (.1) AT1G14380 86 / 3e-17 IQD28 IQ-domain 28 (.1.2.3) AT2G02790 71 / 2e-12 IQD29 IQ-domain 29 (.1) AT3G52290 68 / 8e-12 IQD3 IQ-domain 3 (.1) AT5G03040 67 / 3e-11 IQD2 IQ-domain 2 (.1.2.3) AT3G49260 66 / 6e-11 IQD21 IQ-domain 21 (.1.2.3) AT3G09710 64 / 3e-10 IQD1 IQ-domain 1 (.1.2) AT4G14750 61 / 2e-09 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236200 [exp] 1199 / 0 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.012G069900 [exp] 100 / 7e-22 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.017G079600 [exp] 99 / 2e-21 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.015G063600 [exp] 95 / 6e-20 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.006G226600 [exp] 76 / 5e-14 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.016G086300 [exp] 72 / 7e-13 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 64 / 2e-10 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.012G139800 [exp] 63 / 5e-10 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.006G131100 [exp] 62 / 8e-10 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033167 [exp] 316 / 2e-94 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10042173 [exp] 92 / 8e-19 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10004263 [exp] 84 / 2e-16 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10030784 [exp] 71 / 2e-12 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10019916 [exp] 67 / 3e-11 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 67 / 5e-11 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10013261 [exp] 65 / 2e-10 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3) Lus10021904 [exp] 61 / 2e-09 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10014870 [exp] 61 / 3e-09 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10041419 [exp] 60 / 4e-09 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.002G025200.1 pacid=42777599 polypeptide=Potri.002G025200.1.p locus=Potri.002G025200 ID=Potri.002G025200.1.v4.1 annot-version=v4.1 ATGGGAAGATCCACTTCCTGTTTGAAAATAATCACCTGCGGTAGCGATTCTGCTGACAGAGATGATCTTCAACTCCCTGAGAGCAATGGTTCAAGTGACA AGCGCGGATGGAGTTTCCGGAAGAAATCTGCCCGTCATCGAGTTCTCAGCAACACTATCATTTCAGAAACCACCCCTTCTTCTGTGAACAAGGAGAGTCC AGAACCCGCAAATCTAAACTTCCAGCCACCAGACATCCCTACTGCTCCAGAAAAAAATGCTGTGATACAATGCACTGATGAGAAACCACAGTTGTCTGAG AAACCACAGCTGCCAGACAAGCTGCAGCTGTCGGAGAAACCACTGTCTGCTTCAACAGACCAGGAAGTAGCTGAGGCCATTGTTTTCACCAAGGATGAGA ATGAAGTTGATGATCGTGTGGAAGAGTCTGTTGTTATTGTCATACAGGCTGCTGTCAGGGGGGTTTTGGCTCAAAAAGAACTCCTCAAGCTTAAGAATGT TGTTAAGTTGCAAGCTGCTGTACGTGGCTACCTTGTCCGGCAGCATGCCATTGGAACCCTACGTTGTGTTCAGGCCATTGTTAAAATGCAAGCTCTTGTT CGTGCTCGCCGTGCTCGTTTGTCACCCAAGAGCTCATATGTAGAAAACGAGGTTGGTGGGAAGCATGGCAAACCTATATCCAAGACCTCGGAGAAGGAAA GCTCAGTAATCAAACCAAATGCTACATGCACTTCCATTGAGAAACTGGTCGGCAATAGCTTCGCTCGTCAGCTAATGGAATCGACACCAAAGACCAAGCC TATCCACATCAAGTGTGATTCGTCTAAACGTAATTCTGCATGGAACTGGTTGGAGAGGTGGATGTCTGTTTCATCAGTGGAACCAACACCCAAACCAGAG TTTATAACTGAACAACTAGAAATAGAGAAGAAGGAGAATTTTACCTCTTCTGTGCAAACTAGAGTCCCACCTGAAGAATTCTGTGAGTCGGAAGATTCAA AGTCCAATATCAAGGAAATTGCTCTGCCATCTGAAAGTGAAGAGAGTCTGATAAAATCCGATGCGTTTGACTTCAAGTTTCAGGTGTGCCATCCAAACTC TCCTTTACCAGGAGATATTTTGGAGCAGCCTCAACCTGAGACGAGTAATAAATCGGATGCAGAAGAAACCTCAATAACTATAAATTCTCTTCCAAATCAA ACTATAGAATCTGAAGTAAATTCTAAAAGGGTGACCGATTCTCTTCCTCATAAGCTAGAATTAGATGGTGAACAACCTGATCAACCCAAACGTTCTATGA AAAGGGGAGCCTCTGAACAATTGGAGACTGAAGGAAAGAAATTCGTATATGGATCAAGGAAGGCAAGCAATCCTGCATTCATTGCTGCCCAGACAAAATT CGAGGGGCTGAGTTCAACAGCCAGTTTGAGTAGATCATTCAGTTCTTCGCATCAAGATAGTGGAGTTGAATCAAACACGGAAATATCTGGGATAGATACA GAATCAAGGACCAAGGAGCTTGACATGGCAGAAAACTCAGCCCCCCATAATTCAAGGGTTCAATACGTTGGCTCTGAATGTGGCACTGAACTTTCTGTTA CCTCCACACTTGATTCACCTGATGTATTTGAAGTTGGAGCTGCAGAACTTGAGCATGAAGCCAAGGTTTCAGGGGAAGAAACTCGTAATCCTAACAGAAC AAAAGACTTAGATGTAGAAGATAAAGATTCATCCAAGGATCCAGTTTCAACTTTGTCTCGCTTGGATCAGCCTGAGAAACTTGAGGACGCCATAGGTGAA TCAGCGAATACAATTGTTGTTGCAGATTCCGCACAGGAGGAGATGAATCCAGAGAAAAGTGTATCTGATGTCAAGAGAGAGCTGAACTCGGAGACTGGTG GTCTAGCATATAGATCATCCCCAGAAGCTTCTCCCAGAAGCCATGCAACTGTTCCAGAGTCCCAAGGAACACCTTCAAGTCAGTTATCTGTGAAAGCTAA AAAGAGCAGGGCTGACAAAAGCAGTTCAAGCCAAAAACGTAAGTCTTTATCAGCAAGTAAGAGATCTCCATCGAACCCAAATCATGATTCTGGTGCAGGA ACTAGTGTGGAACAATTGTCCAAAGATCAAAAGAATGGGAAGAGGCGGAATTCATTTGGTTCCACAAAACCTGACAGCACTGATCAAGAGCCAAGAGACA GCAGCAGCAGCAGTTCTCTCCCTCATTTCATGCAAGCCACGGAATCAGCAAGAGCCAAACTCAACGCAAATAACTCACCAAGATCCAGCCCAGATGTGCA GGACAGAGATTTCATCAAGAAGAGGCAGTCCTTACCTGGTGCAAATGGAAGGCAGGGTTCTCCACGCATCCAGCGGTCAATGTCTCAGGCACAGCAGGGT GCAAAGGGAAATGATATTGTTCATGAGAAAAAGTGGCAGAGGTGA
AA sequence Show only first row Show all	>Potri.002G025200.1 pacid=42777599 polypeptide=Potri.002G025200.1.p locus=Potri.002G025200 ID=Potri.002G025200.1.v4.1 annot-version=v4.1 MGRSTSCLKIITCGSDSADRDDLQLPESNGSSDKRGWSFRKKSARHRVLSNTIISETTPSSVNKESPEPANLNFQPPDIPTAPEKNAVIQCTDEKPQLSE KPQLPDKLQLSEKPLSASTDQEVAEAIVFTKDENEVDDRVEESVVIVIQAAVRGVLAQKELLKLKNVVKLQAAVRGYLVRQHAIGTLRCVQAIVKMQALV RARRARLSPKSSYVENEVGGKHGKPISKTSEKESSVIKPNATCTSIEKLVGNSFARQLMESTPKTKPIHIKCDSSKRNSAWNWLERWMSVSSVEPTPKPE FITEQLEIEKKENFTSSVQTRVPPEEFCESEDSKSNIKEIALPSESEESLIKSDAFDFKFQVCHPNSPLPGDILEQPQPETSNKSDAEETSITINSLPNQ TIESEVNSKRVTDSLPHKLELDGEQPDQPKRSMKRGASEQLETEGKKFVYGSRKASNPAFIAAQTKFEGLSSTASLSRSFSSSHQDSGVESNTEISGIDT ESRTKELDMAENSAPHNSRVQYVGSECGTELSVTSTLDSPDVFEVGAAELEHEAKVSGEETRNPNRTKDLDVEDKDSSKDPVSTLSRLDQPEKLEDAIGE SANTIVVADSAQEEMNPEKSVSDVKRELNSETGGLAYRSSPEASPRSHATVPESQGTPSSQLSVKAKKSRADKSSSSQKRKSLSASKRSPSNPNHDSGAG TSVEQLSKDQKNGKRRNSFGSTKPDSTDQEPRDSSSSSSLPHFMQATESARAKLNANNSPRSSPDVQDRDFIKKRQSLPGANGRQGSPRIQRSMSQAQQG AKGNDIVHEKKWQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	0	1
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	1.00	0.9317
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Potri.002G253200 [exp]	1.41	0.8997
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	2.82	0.8945
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.015G118000 [exp]	4.47	0.8664
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	6.63	0.8794
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	9.16	0.8860
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	10.09	0.8863
AT2G46710			Rho GTPase activating protein ...		Potri.014G103600 [exp]	10.95	0.8833
					Potri.007G007000 [exp]	11.31	0.8690
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	12.60	0.8987

Compare expression of checked genes

Potri.002G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.