Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31500 501 / 9e-175 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26310 459 / 4e-158 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26320 458 / 1e-157 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26330 454 / 6e-156 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 452 / 3e-155 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G57260 449 / 5e-154 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G25140 445 / 1e-152 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26280 437 / 2e-149 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT1G13080 434 / 2e-148 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G25180 434 / 3e-148 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G026300 [exp] 1034 / 0 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 1006 / 0 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 1000 / 0 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 752 / 0 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 746 / 0 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 745 / 0 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 701 / 0 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.012G090000 [exp] 452 / 2e-155 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089900 [exp] 452 / 3e-155 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033172 [exp] 640 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 599 / 0 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10010066 [exp] 594 / 0 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 586 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 584 / 0 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 582 / 0 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 580 / 0 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 576 / 0 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033173 [exp] 557 / 0 AT4G31500 462 / 3e-159 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012400 [exp] 489 / 1e-169 AT4G31500 458 / 8e-158 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G025500.1 pacid=42777231 polypeptide=Potri.002G025500.1.p locus=Potri.002G025500 ID=Potri.002G025500.1.v4.1 annot-version=v4.1 ATGGCTTTATCCGACTTCCTAATTCTATCTGTCCCCATTTTCCTCTTGTTTCTTCTGATCAAGAGAAACAAAACCACTAAAAAAGCCTGTTTGCCTCCTG GTCCTGATGGTCTTCCCTTCATAGGTAACTTACACCAGCTTGGCAATTCCAACCTTCATCAGTATCTATGGAAACTCTCTCAAAAACATGGCCCCCTCAT GTACTTGAGGCTAGGTTTCAAGCCAGCCCTGATAGTCTCTTCAGCCAAAATGGCTAGAGAGATATTGAAAACTCATGACCTCGAATTTTGTAGCAGGCCT GCCTTGACTGCCACGAAAAAATTTACCTACAATGGCTTAGACTTGGCTTTCGCACCATATGGAGCTTATTGGAGGGAGGTGAAAAAAATATGTGTCGTTC GTGTCTTTAGCTCAATTCGAGCACAAAGTTTCCGTCCCATTAGAGAAGATGAGGTTTCTCGTATGATTGAAAACATATCCAAATCAGCTCTTGCTTCTAA ACCATTCAACTTGAGTGAAGAATTGGTGTCTCTCACAAGCACAACAATATGCAGAGTTGCCTTTGGAAAAAGGTATGAAATTGGAGGAAGCGATAAAAAT AGGTTCCAAGAGTTGCTTCACGAAACCCAGGCTATGGCTTCAAGCTTTTTCCTTTCGGATTATTTTCCTTGCTTGGGCTGGCTCGTCGATAAACTAACCG GACTGTCGTATCGTCTCGAAAAGAGTTTCAAAGAATTTGATGCTTTCTACAAAGGAATCATTGATGACAATATTGATCCAAATAGGCCTAAGCCCGAGAG GGAGGATACTATACTTGATTTTTTGCTTCAGATACACAAGGAGGGCTCATTTAAAGTTCAGCTAACCCTGGATCACATCAAAGCAATTCTAACGGACATA TTTCTTGCGGGGACAGACACAGGTGCAGTTACTGTGATTTGGGCCATGACCTTCCTAATGAAGAATCCTAAAGCAATGCGAAAAGCTCAAGAAGAAGTTA GAAATTTATTTGGAAATAAAGGTTTTGTGGATGACGATGATGTTCAACAATTGCCTTACCTGAAAGCTGTGGTTAAAGAGACCATGAGATTGCAACCAAC AGCACCACTACTACTCCCAAGAGAAACAACCAAGGAGTGTTACCTAGGTGGGTACGAAATACCAGCCAAGACCTTAGTTTACGTGAGTGCTTGGGCTGTT GGAAGGGACCCGAAAGCTTGGGAGAACCCATATGAGTTCAATCCTGATAGATTCCTGGGCAGTTCCATTGATCTGAAAGGAAATGATTTTGAGCTTATAC CATTTGGTGCTGGTCGAAGAATTTGTCCTGGGATATTTATTGCACTCGCCACTGTGGAACTTTCACTTGCGAATCTTCTTCATAAATTTGACTGGGAAAT GCCATCTGGGGTGGAAGATATAGACATGGATGATGTGCTACCCGGTCTTATTCCTCATATGAGGGATGCTCTCTGCCTTGTGCCTAAGCTTGTGTGTGAT GGGAAAATGGGGCATAAAGGCACCGGAGCTCATGATTATTAG
AA sequence Show only first row Show all	>Potri.002G025500.1 pacid=42777231 polypeptide=Potri.002G025500.1.p locus=Potri.002G025500 ID=Potri.002G025500.1.v4.1 annot-version=v4.1 MALSDFLILSVPIFLLFLLIKRNKTTKKACLPPGPDGLPFIGNLHQLGNSNLHQYLWKLSQKHGPLMYLRLGFKPALIVSSAKMAREILKTHDLEFCSRP ALTATKKFTYNGLDLAFAPYGAYWREVKKICVVRVFSSIRAQSFRPIREDEVSRMIENISKSALASKPFNLSEELVSLTSTTICRVAFGKRYEIGGSDKN RFQELLHETQAMASSFFLSDYFPCLGWLVDKLTGLSYRLEKSFKEFDAFYKGIIDDNIDPNRPKPEREDTILDFLLQIHKEGSFKVQLTLDHIKAILTDI FLAGTDTGAVTVIWAMTFLMKNPKAMRKAQEEVRNLFGNKGFVDDDDVQQLPYLKAVVKETMRLQPTAPLLLPRETTKECYLGGYEIPAKTLVYVSAWAV GRDPKAWENPYEFNPDRFLGSSIDLKGNDFELIPFGAGRRICPGIFIALATVELSLANLLHKFDWEMPSGVEDIDMDDVLPGLIPHMRDALCLVPKLVCD GKMGHKGTGAHDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025500 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026300 [exp]	1.41	0.9864
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025800 [exp]	2.44	0.9800	CYP83F2
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026500 [exp]	3.00	0.9712
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	5.29	0.9136
AT2G16385			unknown protein		Potri.009G119900 [exp]	9.74	0.9060
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.001G288600 [exp]	15.49	0.8841	Pt-ATPRB1.4
AT3G20015			Eukaryotic aspartyl protease f...		Potri.007G106300 [exp]	16.91	0.8661
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123400 [exp]	17.88	0.8725
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	19.41	0.8811	Pt-CLB6.1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G039800 [exp]	20.29	0.8072

Compare expression of checked genes

Potri.002G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.