Plant FIBer expression Database

Potri.002G025701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G025701.1 pacid=42776962 polypeptide=Potri.002G025701.1.p locus=Potri.002G025701 ID=Potri.002G025701.1.v4.1 annot-version=v4.1
ATGACTTCCAGAAAAGAAAAGAAAATCACGTCTCCTAAATGGAATTTCAATTTCAGATCTGAAACTGAAATCTCTAGTCGAGGATCTTCGGCCATAAGAA
TACACCTTCGATCCGAGAGAGGCGCTTCTCAACCTTCCTCCATTGGAAGGGGGAGAGATAGTAATCCTCAAAAGGTTTCAAACCTCAGAGGATATGAAAG
GTTACCAAGGATGCCTCCCGATGAGGCTGAAAGGACTGTTTCTTTTGACCAAATGTCCATGGCCACCTCTAGACAACCCGGGGATTCTTTTTGTTATTGT
CTTGTGTATATCGTTGATGCTATGATGTTTGTGCTGGGATGA
AA sequence
>Potri.002G025701.1 pacid=42776962 polypeptide=Potri.002G025701.1.p locus=Potri.002G025701 ID=Potri.002G025701.1.v4.1 annot-version=v4.1
MTSRKEKKITSPKWNFNFRSETEISSRGSSAIRIHLRSERGASQPSSIGRGRDSNPQKVSNLRGYERLPRMPPDEAERTVSFDQMSMATSRQPGDSFCYC
LVYIVDAMMFVLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G025701
[exp]
0 1
AT3G06240 F-box family protein (.1) Potri.008G199601
[exp]
6.00 0.5738
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.011G029300
[exp]
10.95 0.5588
AT2G26450 Plant invertase/pectin methyle... Potri.018G051200
[exp]
13.85 0.6453
AT1G65480 FT FLOWERING LOCUS T, PEBP (phosp... Potri.008G077700
[exp]
19.49 0.6052 Pt-PNFT3.4
AT2G32460 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, my... Potri.002G228700
[exp]
19.59 0.5804
AT5G44265 Bifunctional inhibitor/lipid-t... Potri.007G138400
[exp]
27.91 0.5619
AT5G27470 seryl-tRNA synthetase / serine... Potri.007G070501
[exp]
30.39 0.5316
AT5G10820 Major facilitator superfamily ... Potri.018G017400
[exp]
32.03 0.5345
AT3G60460 MYB DUO1 DUO POLLEN 1, myb-like HTH tra... Potri.014G054700
[exp]
54.49 0.4609
Potri.010G007833
[exp]
57.23 0.5371

Potri.002G025701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.