Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19880 706 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 132 / 3e-33 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 100 / 1e-22 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G26100 99 / 4e-22 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G47660 100 / 1e-21 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 96 / 3e-21 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G60870 92 / 1e-19 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G12350 92 / 4e-19 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 91 / 6e-19 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02300 89 / 2e-18 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236000 [exp] 825 / 0 AT1G19880 674 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 130 / 7e-33 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G025600 [exp] 115 / 4e-30 AT1G19880 43 / 2e-05 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 103 / 9e-24 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 98 / 7e-22 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.011G121900 [exp] 98 / 1e-21 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.012G018600 [exp] 95 / 2e-20 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.017G099900 [exp] 93 / 5e-20 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.015G009400 [exp] 93 / 9e-20 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033168 [exp] 736 / 0 AT1G19880 724 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 127 / 2e-31 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 116 / 1e-27 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10017581 [exp] 112 / 9e-27 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10033543 [exp] 112 / 1e-26 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006455 [exp] 100 / 7e-22 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10035957 [exp] 98 / 7e-22 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10011399 [exp] 98 / 2e-21 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10042800 [exp] 96 / 3e-20 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042215 [exp] 94 / 3e-20 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.002G026600.3 pacid=42777741 polypeptide=Potri.002G026600.3.p locus=Potri.002G026600 ID=Potri.002G026600.3.v4.1 annot-version=v4.1 ATGTCGACTGTCGAAGCGGAGAAGAAGGCAGAAGAGGAGAAGAAGGCAGAGGAGAAAGGAGGGGAGCTATTGTTCTGTGGCGCCACGTGTTGGGATATTA TTGGCCGCAAGAAAGGCGCACAGGAAGGCAACTTAGTCTCACCTACTCGGCTCCGTCCTCTTGTTGGTGTCAATATCCGCTTCGTTGCCTCCGGTTCCGC GTCGTGTCACTGTGTAGCATTGGATGTTGAAGGGCGTTGCTACACATGGGGACGCAATGAGAGGGGGCAACTGGGTCATGGAGACACGATTCAGCGCGAT AGGCCAACAGTCGTTTCTGAACTTTCCAAGTATAAACTCATCAAGGCTGGAGCTGGTAGGAGCCATACAGTAGTGGTTACTGAAGATGGTTTATCGCTTG CATTTGGCTGGAATAAACATGGGCAGCTGGGCTCTGGCTCAGCAAGAAATGAAATTGAGTCATCTCCTGTTCGCTGTCTCGTTTCTGATGTCAAAACTAC TGCTTGTGGCGCTGACTTCACGGTGTGGTTATCCTCTGTTGAAGGAGCTTCTATATTATCTGCAGGCCTTCCACAGTATGGTCAACTTGGACATGGAACT GACAACGAGTACAACACAAAAGACAGCTCAGTCCGGCTAGCATATGAAGCCCAACCTCGCCCAAGAGCATTAACTGCTCTTGCGAGAGAAACCATTGTGA AAGTTGCATGCGGAACAAATCATACAGTGGCTGTGGATTCAAATGGTTATGTTTACACGTGGGGCTTTGGCGGTTATGGAAGGCTTGGACATAGAGAGCA GAAGGATGAATGGGTCCCTCGGCGTGTGGATGTCTTCTCAAAGCACAATGTTCTGCCTCCTGATGCAGTTATTTCAGCTGGTTCTGTGAATTCTGCATGT ACTGCAGGAGGTGGACAGTTGTATATGTGGGGAAAAATAAAAAATACTGGCGATGACTGGATGTATCCTAAACCTCTCATGGATTTAAGTGGTTGGAATT TACGTTGCATGGATTCAGGAAACATGCATCATTTTGTTGGTGCTGATAACTCCTGCATTAGTTGGGGTCATGCTCAAAATGGAGAACTGGGATATGGCCC TAGTGGTCAAAAGTCTTCGGCAGTGCCCAAGAAGGTGGATATTCTGGAGGGCATGCATGTTATTGGTGTTGCGTGTGGCATGGGCCATTCCATGGTCATA GTTGACAGAATGAATGTTGGTGATCAACTTGATCAGCTTGATGTCTATGATGGCAAAGCTTCTGGTGAAGGCAGTGGGGAGCCTGAGCGTAAAAACCCTG TGAAGCAAAGTGCGAAAAAGGGTGCTGCCAAAGCTTCTGATAACTCCAGAAAGAGGAAGTCAAAAGATTCATCGGAATCAGAAGATGAAGAGAATGGTGA TGACGAAAGTGATGCCAGTGAAGATCAAGTCAATGGCCAGACAGAAAAGAAGAGCAAACGGGGTGGAAAAGTTTCTGGCAGGGGTCAAAGTAAAGGTGGA AAAAAATCAACATCCGATGGAAAAAGTACAGGGCGTGGGCGGGGCCGCCCTCTATCAGGAAATAAAAGCACAGTTTCGTCTCAAGAAAAAGCTGGTAAGA GAGGAAGACCACGCAAGTCGTGA
AA sequence Show only first row Show all	>Potri.002G026600.3 pacid=42777741 polypeptide=Potri.002G026600.3.p locus=Potri.002G026600 ID=Potri.002G026600.3.v4.1 annot-version=v4.1 MSTVEAEKKAEEEKKAEEKGGELLFCGATCWDIIGRKKGAQEGNLVSPTRLRPLVGVNIRFVASGSASCHCVALDVEGRCYTWGRNERGQLGHGDTIQRD RPTVVSELSKYKLIKAGAGRSHTVVVTEDGLSLAFGWNKHGQLGSGSARNEIESSPVRCLVSDVKTTACGADFTVWLSSVEGASILSAGLPQYGQLGHGT DNEYNTKDSSVRLAYEAQPRPRALTALARETIVKVACGTNHTVAVDSNGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFSKHNVLPPDAVISAGSVNSAC TAGGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADNSCISWGHAQNGELGYGPSGQKSSAVPKKVDILEGMHVIGVACGMGHSMVI VDRMNVGDQLDQLDVYDGKASGEGSGEPERKNPVKQSAKKGAAKASDNSRKRKSKDSSESEDEENGDDESDASEDQVNGQTEKKSKRGGKVSGRGQSKGG KKSTSDGKSTGRGRGRPLSGNKSTVSSQEKAGKRGRPRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	0	1
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	1.73	0.8554
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Potri.005G065800 [exp]	3.16	0.8042
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	3.46	0.8170
AT5G13520			peptidase M1 family protein (....		Potri.008G045900 [exp]	3.87	0.8191
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Potri.002G081200 [exp]	5.65	0.8199
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	6.63	0.7955	ARF6.4
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.003G110800 [exp]	8.77	0.8132
AT1G06560			NOL1/NOP2/sun family protein (...		Potri.005G204900 [exp]	10.09	0.7727
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	12.24	0.7803
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	14.96	0.7770

Compare expression of checked genes

Potri.002G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.