Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42520 439 / 2e-155 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G21240 299 / 4e-101 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 270 / 2e-89 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2) AT2G35550 155 / 7e-46 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT1G68120 151 / 1e-43 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1) AT1G14685 149 / 1e-42 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT2G01930 147 / 5e-42 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235900 [exp] 605 / 0 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.009G125300 [exp] 322 / 2e-109 AT2G21240 377 / 5e-132 basic pentacysteine 4 (.1.2) Potri.004G163700 [exp] 317 / 7e-108 AT2G21240 378 / 3e-132 basic pentacysteine 4 (.1.2) Potri.010G101400 [exp] 155 / 6e-45 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.015G032900 [exp] 152 / 5e-44 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 150 / 3e-43 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.012G040600 [exp] 149 / 8e-43 AT2G01930 259 / 3e-86 basic pentacysteine1 (.1.2) Potri.012G040700 [exp] 149 / 1e-42 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.008G140200 [exp] 149 / 1e-42 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024313 [exp] 515 / 0 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10012389 [exp] 513 / 0 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10042056 [exp] 289 / 6e-97 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 283 / 2e-94 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10035462 [exp] 246 / 6e-78 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10031078 [exp] 230 / 6e-74 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10023543 [exp] 154 / 2e-44 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10040427 [exp] 152 / 8e-44 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [poplar] [flax] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Potri.002G026700.1 pacid=42778337 polypeptide=Potri.002G026700.1.p locus=Potri.002G026700 ID=Potri.002G026700.1.v4.1 annot-version=v4.1 ATGGATGATGGGGGGCATCGTGAAAATGGCAGGCATAAAGCGGATCAATATAAAACAGCTCAGGGCCAGTGGCTGATGCAACCACAGCCATCCATGAAAC AGATCATGGCCATCATGGCTGAAAGAGATGCTGCCATTCATGAGAGAAATATGGCTCTTTCAGAAAAGAAGGCGGCTATTACTGAAAGAGACATGGCATT CCTGCAGCGAGATTCGGCAATCGCTGAACGAAATAATGCCTTGCTGGAGCGAGACAATGCTATCGCTACTCTGCAATACCGGGAGAACTCCTTGCCAAGT GGTAACATAACCACCTGTCCACCTGGATTCCATAACTCGCGTGGGGTGAAGCACATGCACCACCAACAGCAGCAGCATACACATCATCTGCCCCACATGA ATGAAGGTCCATATGGTACTAGGGAAATGCAGACAAGTGATGCTTTGCCAGTATCACCAGTTGCATCTGAGGTTGCAAAGCCACAGCGGGGTAAACGACC AAAGGATGCTAAGGCAACACCATCTAATAAAAAGACTTCAAAATCTCCAAGGAAGGTTAAGAGGGAGAGTGACGACACGGACATGTTTGGGAAGTCACAT GAGTGGAAAAATGGGCAGGATATGGACGGTGGAGGTGATGATCCAAACAAACAGCTGGCAGCATCTAAGTCTGACTGGAAGGGTCAAGACCTTGGGTTGA ACCAGGTTGCATTCGATGAAACAACCATGCCAGCACCCGTGTGCTCATGCACTGGAGTCTTCAGGCAGTGCTACAAATGGGGAAATGGTGGATGGCAGTC TTCGTGCTGCACAACCACCTTGTCAATGTATCCTCTACCTGCCGTGCCCAACAAGCGCCATGCTCGTGTTGGTGGGCGGAAAATGAGTGGGAGCGCTTTT AGCAAACTGCTTAGCCGACTTGCAGCTGAAGGCCAAGATCTGTCAAATCCAGTTGATCTCAAGGACCATTGGGCCAAGCATGGAACTAATCGCTACATAA CAATAAAATAG
AA sequence Show only first row Show all	>Potri.002G026700.1 pacid=42778337 polypeptide=Potri.002G026700.1.p locus=Potri.002G026700 ID=Potri.002G026700.1.v4.1 annot-version=v4.1 MDDGGHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAITERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSLPS GNITTCPPGFHNSRGVKHMHHQQQQHTHHLPHMNEGPYGTREMQTSDALPVSPVASEVAKPQRGKRPKDAKATPSNKKTSKSPRKVKRESDDTDMFGKSH EWKNGQDMDGGGDDPNKQLAASKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAF SKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Potri.002G026700 [exp]	0	1
AT5G38210			Protein kinase family protein ...		Potri.004G096550 [exp]	11.74	0.7080
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	15.03	0.7198
AT5G17550		AtPEX19-2, PEX1...	peroxin 19-2 (.1)		Potri.001G157900 [exp]	20.83	0.7091
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	26.68	0.6967	NAC003,ATNAC2.1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.006G091800 [exp]	28.28	0.6956
AT5G40240			nodulin MtN21 /EamA-like trans...		Potri.015G073200 [exp]	30.59	0.6835
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.015G141100 [exp]	31.11	0.6923
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Potri.008G097200 [exp]	50.41	0.6309
AT5G22040			unknown protein		Potri.010G244600 [exp]	52.64	0.6308
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.012G089900 [exp]	76.49	0.6701	CYP71AP2v1

Compare expression of checked genes

Potri.002G026700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.