Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24160 640 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 62 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G64670 59 / 2e-09 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT5G41900 58 / 7e-09 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 55 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 52 / 5e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 48 / 6e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 47 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 46 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235200 [exp] 692 / 0 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 54 / 7e-08 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G147400 [exp] 54 / 1e-07 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G175700 [exp] 53 / 2e-07 AT4G12830 545 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 52 / 4e-07 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 51 / 8e-07 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G062700 [exp] 49 / 2e-06 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G083400 [exp] 49 / 3e-06 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 47 / 2e-05 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024310 [exp] 665 / 0 AT4G24160 663 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033927 [exp] 169 / 2e-50 AT4G24160 191 / 8e-60 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002142 [exp] 60 / 2e-09 AT4G12830 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 57 / 2e-08 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023147 [exp] 53 / 2e-07 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 50 / 1e-06 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 50 / 1e-06 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10033234 [exp] 50 / 1e-06 AT4G24140 587 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10025172 [exp] 49 / 6e-06 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10008266 [exp] 49 / 6e-06 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.002G027300.2 pacid=42778189 polypeptide=Potri.002G027300.2.p locus=Potri.002G027300 ID=Potri.002G027300.2.v4.1 annot-version=v4.1 ATGAACCTGTTTCGCTCACGTGTGTCAACCTCAGTCGTATCTAGAATGGCCGGAGAGCTAGGATCCTCTGCTTCCGTTCCCACCACCACATCATCATCAT CATCATCATGGGCAAAAACAAGATCTTTGTGGCCTTCTATTCTCCGTTGGATCCCCACTTCCGTCGATCACATTATCGCCGCCGAAAAACGCCTTCTCTC TCTAGTCAAGACTTCGTATGTGGTAGAGCAAGTGAATATTGGTTCGGGTCCACCGGGGTCGAAAGTACGATGGTTTCGATCTACGAGTGATGAGCCTAGG TTTATTAATACGGTGACGTTTCAAAGTAAAGAGGATTCTCCCACGCTTGTAATGGTCCATGGATATGGTGCTTCTCAAGGTTTCTTCTTCAGAAATTTTG ACGCTCTTGCTAGTCGTTTTAAGGTCATTGCCATTGATCAGCTTGGTTGGGGTGGATCAAGTAGACCTGACTTTACCTGCAAAAGCACTGAAGAAACTGA GGCGTGGTTCATTGATTCCTTTGAGGAATGGCGAAAAGCGAAGAACCTTAGTGGCTTTATATTACTCGGGCATTCTTTTGGCGGGTACGTTGCGGCTAAA TATGCACTCAAGCATCCTGAGCATGTTCAGCACTTGATTTTAGTGGGACCTGCTGGAGTTTCGTCAGAATCGGAATCCAAGCCTGAGCGGCTCACCAAAT TGAGGGCAACTTGGACAGGAGCTGTTTTTAATCATCTGTGGGAATCTAATTTTACTCCTCAGAAGGTTGTTAGAGGTTTAGGTCCTTGGGGTCCAGATCT CGTAAACCGCTACACAACTGCTAGATTTGGTGCCTATTCAACTGGAGAAGTTTTGAATGAGGAGGAGTCCAAATTGCTATCAGATTATGTGTACCATACT TTAGCTGCCAAAGCTAGTGGAGAGCTGTGCTTGAAATATATTTTTTCATTTGGAGCATTTGCTCGGATGCCCCTTGTACAGAGTGCATCAGAATGGAAAG TGCCAACCACTTTCATATATGGCTTCGAAGATTGGATGAACTATCAAGGTGCTCAAGAAGCTCGCCAGCATATGAAGGTCCCATGCGAAATCATTCGGGT CCCACAGGGTGGGCACTTTGTATTTATAGACAACCCAACCGGGTTCCATTCAGCTGTGTTCTATGCTTGTCGGAGGTATATTTCACCTAAACCTGAAAAT GAACGTCTCCCCGAAGGTCTCACGTTTGCTTAG
AA sequence Show only first row Show all	>Potri.002G027300.2 pacid=42778189 polypeptide=Potri.002G027300.2.p locus=Potri.002G027300 ID=Potri.002G027300.2.v4.1 annot-version=v4.1 MNLFRSRVSTSVVSRMAGELGSSASVPTTTSSSSSSWAKTRSLWPSILRWIPTSVDHIIAAEKRLLSLVKTSYVVEQVNIGSGPPGSKVRWFRSTSDEPR FINTVTFQSKEDSPTLVMVHGYGASQGFFFRNFDALASRFKVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSGFILLGHSFGGYVAAK YALKHPEHVQHLILVGPAGVSSESESKPERLTKLRATWTGAVFNHLWESNFTPQKVVRGLGPWGPDLVNRYTTARFGAYSTGEVLNEEESKLLSDYVYHT LAAKASGELCLKYIFSFGAFARMPLVQSASEWKVPTTFIYGFEDWMNYQGAQEARQHMKVPCEIIRVPQGGHFVFIDNPTGFHSAVFYACRRYISPKPEN ERLPEGLTFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.002G027300 [exp]	0	1
AT4G26180			Mitochondrial substrate carrie...		Potri.006G153600 [exp]	1.73	0.8785
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	2.82	0.9014
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	3.74	0.8902
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	5.65	0.8780
AT4G27020			unknown protein		Potri.011G137700 [exp]	8.48	0.8576
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.004G156200 [exp]	12.40	0.8761	Pt-RD2.2
AT2G38340	AP2_ERF	DREB2E, DREB19	dehydration response element-b...		Potri.016G126100 [exp]	14.49	0.8705	Pt-DREB2.6
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	16.43	0.8778
AT3G13620			Amino acid permease family pro...		Potri.001G007200 [exp]	16.49	0.8640	PtrLAT1
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G277400 [exp]	16.73	0.8466

Compare expression of checked genes

Potri.002G027300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.