Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75640 1274 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 1211 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 469 / 4e-146 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 424 / 6e-129 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 367 / 5e-109 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G62230 351 / 2e-104 ERL1 ERECTA-like 1 (.1.2) AT5G46330 348 / 6e-102 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 318 / 3e-92 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 319 / 6e-92 Leucine-rich receptor-like protein kinase family protein (.1) AT2G02220 310 / 2e-89 ATPSKR1 phytosulfokin receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235100 [exp] 1747 / 0 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G014700 [exp] 1263 / 0 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G065400 [exp] 443 / 1e-136 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G132200 [exp] 365 / 1e-109 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.012G130400 [exp] 365 / 2e-109 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.006G051700 [exp] 359 / 4e-108 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G195200 [exp] 366 / 6e-108 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 352 / 4e-103 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.016G055400 [exp] 331 / 1e-97 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033926 [exp] 1366 / 0 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033924 [exp] 1324 / 0 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10042177 [exp] 1292 / 0 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004266 [exp] 894 / 0 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10036251 [exp] 420 / 2e-127 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10027221 [exp] 374 / 8e-112 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10003612 [exp] 371 / 4e-110 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10038930 [exp] 365 / 1e-108 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10031689 [exp] 359 / 9e-107 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 357 / 2e-106 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G027400.1 pacid=42778841 polypeptide=Potri.002G027400.1.p locus=Potri.002G027400 ID=Potri.002G027400.1.v4.1 annot-version=v4.1 ATGTCCACGGCAACGGCTATTTTTCTCTTCTTCATTTCTGCAACCATAATAACGTACACTCAAAGCGATGTCGTTTCTTTGTCTGAGGAGATCCAAGCTT TGACGTCGTTCAAGCTCAATCTCAACGATCCACTAGGAGCATTAGACGGTTGGGATGAATCCACGCAGTCAGCTCCTTGTGACTGGCATGGCATTGTATG TTACAATAAACGAGTTCATGAAGTACGGCTACCTCGTCTCCAACTCAGTGGTCAACTCACTGACCAACTCTCTAAGTTACACCAGTTGCGTAAGTTAAGT CTCCACTCAAACAACTTCAACGGCTCCATCCCTCCCTCGCTCTCTCAGTGCTCTCTCTTACGCGCCGTTTACTTGCAGTCCAACTCACTCTACGGTAACT TTCCGTCAGCTATCGTCAACCTTACCAACCTTCAATTCCTCAACGTCGCTCACAATTTCCTTAGCGGAAAAATCTCTGGTTACATTTCAAATTCTCTCCG TTACCTCGATATCTCATCAAATTCATTATCCGGTGAGATACCGGGGAACTTCTCATCGAAATCTCAGCTCCAACTCATCAATTTATCGTACAATAAATTC TCCGGTGAAGTTCCGGCGAGCATTGGTCAACTTCAAGAGCTTGAGTACTTATGGCTTGATTCTAATCAGTTGTACGGCACTTTACCATCAGCAATAGCCA ATTGTTCATCGCTTATTCATTTAAGCATCGAAGATAATTCGCTTAAAGGTTTGGTACCGGCAAGTATTGGCTTAATACCTAAACTCGAAGTGCTTTCTTT ATCTCGGAATGAAATCTCCGGCTCGATTCCGGCGAATGTTGTCTGTGGAGTTTCGAAGAAGCTGAGGATTCTGAAGTTTGGAGTTAATGCATTCACGGGA ATTGAACCGCCGTCAAATGAAGGTTGTTTTAGTACTCTGGAGGTTTTAGATATTCACGAGAATCACATTAACGGCGTGTTTCCGTCTTGGTTGACTGGTT TGACTACGGTTAGAGTGGTTGATTTTTCAGGAAATTTATTTTCGGGGAGTTTGCCGGATGGTATTGGTAATCTTTCGAGGTTAGAGGAGTTTAGAGTGGC TAATAATTCATTAACTGGTGATATTCCTAATCATATTGTAAAATGTGGTTTCTTACAGGTTCTTGATCTTGAAGGGAATCGGTTTGGTGGTCGGATTCCT ATGTTTTTGAGCGAAATAAGGAGGTTAAGGTTGTTGTCTTTAGGAGGGAATTTGTTTTCCGGTTCGATTCCACCGAGTTTTGGAGGTCTTTTTGAGCTTG AAACGTTGAAATTGGAGGCTAATAATTTGAGTGGAAATGTGCCCGAGGAGATAATGAGGTTGACAAATTTGAGCACTTTGGATTTGAGCTTTAATAAGTT TTATGGTGAGGTTCCTTACAATATAGGGGACTTGAAGGGTTTGATGGTTTTGAACTTGAGTGCTTGTGGGTTTTCAGGGAGGATTCCGGCTAGTATTGGG AGTTTGTTGAAGCTGACAACTCTGGATTTGAGTAAGCAAAATTTGTCTGGTGAGTTGCCGATTGAAATATTTGGTTTGCCAAGTTTGCAAGTTGTTTCTT TGGAAGAGAATAAGTTATCTGGGGCTGTTCCTGAAGGTTTCAGCAGCTTAGTTAGTCTACAGTATCTGAATCTCACATCTAATTCCTTCACTGGCGAGGT TCCGGAGAATTATGGATTTCTTACGTCATTGGCTGTTCTTTCATTGTCTCGGAATTATATTTCGGGTATGATCCCAGCTGAGCTCGGTAACTGTTCAAGT CTTGAAGTGCTTGAAATGCGTTCTAATCATCTGAGGGGCGGCATTCCAGGTGATATCTCTCGCTTGTCACGTTTGAAGAAGCTTGATTTGGGTGAGAATG CTTTAACTGGTGAAATCCCGGAGAATATTTATAGATGCTCCCCTTTGATTTCTCTTTCGTTGGATGGTAATCATCTTTCGGGCCATATACCAGAGTCATT GTCGAAGTTACCAAACCTCACAGTTCTGAATCTTTCCTCCAACAGCTTGAATGGGACTATTCCAGCAAATCTTTCTTACATTCCAAGCTTGATATACTTA AATTTATCAAGGAACAATCTTGAAGGAGAGATTCCAGAGTTGCTAGGTTCTCGGTTCAATGATCCTTCTGTGTTTGCTGTGAATGGGAAATTATGTGGTA AGCCAGTGGATAGAGAATGTGCAGATGTTAAGAAGAGGAAGAGGAAGAAGTTGTTTCTATTCATCGGCGTGCCCATAGCTGCAACTATCCTTTTAGCGTT GTGTTGCTGTGCATACATTTACAGTCTTTTACGCTGGCGCAGTAGGCTTAGAGATGGGGTAACCGGTGAGAAGAAGCGAAGCCCAGCTCGTGCAAGTTCA GGGGCAGACAGAAGTCGTGGCAGCGGAGAAAACGGAGGGCCAAAACTTGTCATGTTCAATAACAAGATAACATATGCAGAGACATTGGAGGCAACTAGAC AGTTTGACGAGGACAATGTGTTAAGCAGGGGAAGATATGGACTTGTATTCAAGGCTTCATATCAAGATGGAATGGTGCTCTCAGTCCGGCGCCTCCCAGA CGGATCAATCAGTGCAGGCAACTTTCGTAAAGAAGCGGAATCACTAGGCAAGGTGAAGCATAGAAACCTAACAGTTTTACGTGGCTACTATGCAGGACCA CCTGATGTAAGGCTACTCGTCTATGATTACATGCCAAATGGAAACCTTGCGACTCTCCTTCAAGAAGCCTCACACCAAGACGGGCATGTTCTAAACTGGC CAATGCGCCACTTAATTGCTCTCGGCATTGCTCGTGGGCTAGCTTTCCTGCATTCACTCTCAATGATTCACGGTGATGTCAAGCCACAAAATGTCCTTTT TGATGCTGATTTCGAAGCACATTTATCTGAATTCGGGCTCGATAAATTAACCATAGCAACACCAGCAGAAGCCTCCTCGTCTTCCACCCCAATGGGTTCA CTAGGCTATACATCACCAGAAGTAGCATTAACAGGACAACCGACAAAAGAAGCTGACGTGTACAGTTTTGGCATTGTATTGTTAGAGATTCTAACAGGAA GGAAACCAGTTATGTTCACGCAAGACGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATATCAGAACTACTTGAACCCGGATTGCT TGAGTTAGACCCAGAATCATCAGAATGGGAAGAGTTCTTGCTAGGAATCAAAGTTGGCCTTCTTTGCACAGCACCTGATCCACTTGATAGACCATCAATG GCTGATATTGTTTTCATGCTTGAAGGTTGTAGGGTTGGACCAGATATTCCATCTTCACTACCTTCTCCAATTTGA
AA sequence Show only first row Show all	>Potri.002G027400.1 pacid=42778841 polypeptide=Potri.002G027400.1.p locus=Potri.002G027400 ID=Potri.002G027400.1.v4.1 annot-version=v4.1 MSTATAIFLFFISATIITYTQSDVVSLSEEIQALTSFKLNLNDPLGALDGWDESTQSAPCDWHGIVCYNKRVHEVRLPRLQLSGQLTDQLSKLHQLRKLS LHSNNFNGSIPPSLSQCSLLRAVYLQSNSLYGNFPSAIVNLTNLQFLNVAHNFLSGKISGYISNSLRYLDISSNSLSGEIPGNFSSKSQLQLINLSYNKF SGEVPASIGQLQELEYLWLDSNQLYGTLPSAIANCSSLIHLSIEDNSLKGLVPASIGLIPKLEVLSLSRNEISGSIPANVVCGVSKKLRILKFGVNAFTG IEPPSNEGCFSTLEVLDIHENHINGVFPSWLTGLTTVRVVDFSGNLFSGSLPDGIGNLSRLEEFRVANNSLTGDIPNHIVKCGFLQVLDLEGNRFGGRIP MFLSEIRRLRLLSLGGNLFSGSIPPSFGGLFELETLKLEANNLSGNVPEEIMRLTNLSTLDLSFNKFYGEVPYNIGDLKGLMVLNLSACGFSGRIPASIG SLLKLTTLDLSKQNLSGELPIEIFGLPSLQVVSLEENKLSGAVPEGFSSLVSLQYLNLTSNSFTGEVPENYGFLTSLAVLSLSRNYISGMIPAELGNCSS LEVLEMRSNHLRGGIPGDISRLSRLKKLDLGENALTGEIPENIYRCSPLISLSLDGNHLSGHIPESLSKLPNLTVLNLSSNSLNGTIPANLSYIPSLIYL NLSRNNLEGEIPELLGSRFNDPSVFAVNGKLCGKPVDRECADVKKRKRKKLFLFIGVPIAATILLALCCCAYIYSLLRWRSRLRDGVTGEKKRSPARASS GADRSRGSGENGGPKLVMFNNKITYAETLEATRQFDEDNVLSRGRYGLVFKASYQDGMVLSVRRLPDGSISAGNFRKEAESLGKVKHRNLTVLRGYYAGP PDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSLSMIHGDVKPQNVLFDADFEAHLSEFGLDKLTIATPAEASSSSTPMGS LGYTSPEVALTGQPTKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVGLLCTAPDPLDRPSM ADIVFMLEGCRVGPDIPSSLPSPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75640			Leucine-rich receptor-like pro...		Potri.002G027400 [exp]	0	1
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	1.41	0.9241	Pt-PSPK3.1
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.009G115300 [exp]	3.16	0.8138	Pt-AGB1.1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.017G122300 [exp]	3.74	0.8276
					Potri.001G020140 [exp]	5.65	0.8207
AT4G38520			Protein phosphatase 2C family ...		Potri.009G137400 [exp]	6.78	0.7377	Pt-PP2.7
AT5G57760			unknown protein		Potri.018G098900 [exp]	7.07	0.8295
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	8.12	0.8087
AT4G27590			Heavy metal transport/detoxifi...		Potri.015G003800 [exp]	8.66	0.8421
					Potri.003G204425 [exp]	9.00	0.8180
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.018G053900 [exp]	9.48	0.7539

Compare expression of checked genes

Potri.002G027400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.