Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42480 284 / 3e-90 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235000 [exp] 447 / 2e-153 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033922 [exp] 262 / 6e-82 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10024309 [exp] 260 / 2e-81 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G027501.1 pacid=42778403 polypeptide=Potri.002G027501.1.p locus=Potri.002G027501 ID=Potri.002G027501.1.v4.1 annot-version=v4.1 ATGAATGAGGCCTTCTTATGCATGACTGCAACTGAGCAGGTTGACCTGTTCGTCACCACACCAAGTAATATCCCAGCACAAAATTTTGAAGTTTATGGAG TGGCACATGCCCCTGTTGCCAAAGCTTTCGTGGGTAAAAAGCCCCATCTCATCCCAGATGCTGATAACCTATTTGGACAACTTCAGCAGATTAAGGTAAC AAATCAAGGGAGTCTTGTTTCTGTCTTTAATTCCACGGAAAACCATGAGATTGACTTCGCTTTGGAGAGTGGTCTTTGTTCACTGCTTGTTGGCGAGCTT GATGAGTGTCGTAAATGGTTGGGTTTAGACAGTGATAACTGTCCTTGCAGAAATCCACCTATTTTTTATTTTATCATGGAAAATTCGAAGGATGATGATG ATAATGATCTTCCTGGGCTTTGTAAATTGTTGGAGACATGGTTGATGGGGGTGTTATTTCCTAGATTTAGGGACACCAAAGATATAGAATTCAAGCTCGG AGATTATTATGATGATCCCATTGTCTTGAGATATTTAGAAAGGCAGGAGGGAGGTGGTCGTTCTCCCCTGGCTGCCGCAGCAGCCATAGTGAGAATTGGA GCTGAGGCTACTGCTGTTATTGATCATGTGAAGGCTAGTGCAATTCAGGCATTGCAGAAGGTGTTTCCACTTGGCCACAAGGACATTGGTGCAGAAATCC ATGAAAATGATTGGATCAATTATGTTCATCCTGCTGTAGAAACAGAAGAGCCTTTTGAAAGTCTTGGTCTAGAAAATCCTGAAGAAATGTTTTCTGATGA ATGTATGTATGTCCATGTTACACATGACCAAGTTACTTAA
AA sequence Show only first row Show all	>Potri.002G027501.1 pacid=42778403 polypeptide=Potri.002G027501.1.p locus=Potri.002G027501 ID=Potri.002G027501.1.v4.1 annot-version=v4.1 MNEAFLCMTATEQVDLFVTTPSNIPAQNFEVYGVAHAPVAKAFVGKKPHLIPDADNLFGQLQQIKVTNQGSLVSVFNSTENHEIDFALESGLCSLLVGEL DECRKWLGLDSDNCPCRNPPIFYFIMENSKDDDDNDLPGLCKLLETWLMGVLFPRFRDTKDIEFKLGDYYDDPIVLRYLERQEGGGRSPLAAAAAIVRIG AEATAVIDHVKASAIQALQKVFPLGHKDIGAEIHENDWINYVHPAVETEEPFESLGLENPEEMFSDECMYVHVTHDQVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.002G027501 [exp]	0	1
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.009G133900 [exp]	3.74	0.8611
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	3.74	0.8380
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	6.92	0.8575
AT3G06130			Heavy metal transport/detoxifi...		Potri.008G202800 [exp]	9.79	0.8369
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	11.48	0.8432
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.007G004001 [exp]	12.12	0.8158
AT1G73240			unknown protein		Potri.003G213050 [exp]	12.16	0.8499
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	14.14	0.8117
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	15.16	0.8489
AT3G57620			glyoxal oxidase-related protei...		Potri.005G047701 [exp]	17.08	0.7745

Compare expression of checked genes

Potri.002G027501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.