Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25360 1047 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 612 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 521 / 8e-175 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 521 / 1e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 491 / 4e-163 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 489 / 5e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49710 485 / 3e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 482 / 3e-160 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G29760 480 / 4e-159 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085500 [exp] 593 / 0 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G136200 [exp] 568 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G048800 [exp] 551 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 542 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 524 / 3e-174 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 522 / 5e-174 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 513 / 4e-169 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 504 / 4e-169 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 509 / 2e-166 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028106 [exp] 1052 / 0 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 639 / 0 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 591 / 0 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 562 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 555 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013540 [exp] 525 / 5e-176 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 513 / 2e-172 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 517 / 3e-172 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 513 / 8e-171 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 516 / 3e-170 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G027800.1 pacid=42777189 polypeptide=Potri.002G027800.1.p locus=Potri.002G027800 ID=Potri.002G027800.1.v4.1 annot-version=v4.1 ATGACAACACCAGACTCCATCCGTACAGCAGCAAATCGTTATGGATCCTTGCTACAAATATGCTGCCTTCAAAGTCCCATCTCTTACTCCCTTGCCCGTC CTGTCCATGCCCACATGATAGCTTCTGGGTTCCAGCCACGTGGCCACATACTCAACCGTCTGATCGACATCTACAGCAAATCCTCAAAATTGAACTACGC TCGCTACCTGTTCGACGAAATCCCTCAACCAGATATTGTTGCAAGAACAACACTGATTGCTGCGTATTCTGCTGCAGGGGATCTAAAACTTTCGCGTAAG ATATTTTCAGATACCCCGTTAGGAATGCGAGACTCTGTTTTTTATAACGCGATGATCACTGCTTATTCGCATAATCATGATGGTCATGCTGCTATTGAAC TATTCTGTGATATGCAGAGGGATAATTTTAGGCCTGATAATTATACGTTTACGAGTGTTCTTGGTGCATTGGCACTCGTTGCTGAAAAAGAGAAGCACTG CCAGCAGTTGCATTGTGCAGTGGTTAAGTCGGGAACTGGGTTCGTCACTTCAGTATTAAACGCGCTAATTTCTTCTTATGTGAAGTGTGCAGCTTCACCG TCAGCACAATCATCGTCCTTGATGGCTGAGGCTAGGAAGTTGTTTGATGAAATGCCTAACAGAGATGAGTTGTCATGGACTACTATAATTACTGGGTATG TGAAGAATAATGATCTTGACGCAGCCAAAGAGTTTCTAAATGGGACGAGCAAGAAATTAGGGGTCGCATGGAATGCCATGATTTCAGGTTATGCGCATCG TGGGCTATATCTAGAAGCGTTTGAGATGTTCAGGAAGATGATTATGTCAAAAATTCAGTTGGATGAGTTTACTTTTACAAGCGTTATTAGCGTTTGTGCA AATGCTGGATGCTTTCGGCTTGGAAAGGAAATGCATGCTTACTTCCTAAAAACCGTGGCAAACCCAGCACCGGACGTTGCAATGCCTGTGAACAATGCAT TGATTACGTTCTACTGGAAATGTGGTAAAGTTGATATCGCCCAGGAGATATTTAATAAGATGCCCGAAAGGGATCTTGTTTCATGGAATATAATCTTATC AGGGTATGTGAATGTTAGGTGCATGGATGAAGCTAAATCCTTTTTCAACGAGATGCCTGAGAAAAATATTTTGTCATGGATTATAATGATATCTGGATTA GCACAGATTGGGTTTGCGGAAGAGGCCTTGAAGTTTTTCAACCGGATGAAATTGCAGGGTTTTGAACCATGTGATTATGCATTTGCAGGAGCTATTATAT CTTGTTCTGTGCTTGGATCATTAAAGCATGGACGCCAGCTCCATGCTCAAGTTGTTAGGTATGGGTATGAATCAAGCCTTTCAGCTGGAAATGCACTGAT CACAATGTATGCAAGATGTGGTGTTGTTGACGCAGCACATTGTTTATTCATTAATATGCCTTGTGTGGACGCAATATCTTGGAATGCCATGATCGCAGCT CTGGGGCAACATGGACAAGGTACTCAAGCAATTGAACTTTTTGAAGAGATGCTGAAGGAAGGCATATTGCCTGATCGGATATCCTTTCTTACAGTTATTT CTGCTTGTAGCCATGCAGGTTTAGTTAAAGAAGGCCGTAAATATTTTGATTCAATGCATAACGTTTATGGTGTAAACCCAGATGAAGAACATTATGCACG CATTATTGATTTGTTATGTCGAGCTGGGAAATTCTCAGAAGCAAAGGAGGTGATGGAATCAATGCCTTTTGAGCCTGGTGCACCAATCTGGGAAGCACTT TTAGCTGGTTGCCGGATTCATGGGAATATAGATTTGGGGATTGAAGCTGCAGAGCGACTCTTTGAGCTCAAACCTCAACATGACGGAACCTATGTACTGT TGTCAAATATGTATGCTGTAGCTGGCCAGTGGAATGACATGGCCAAAGTGCGGAAACTAATGAGGGACCGTGGGGTGAAAAAGGAGCCTGGGTGTAGTTG GATTGAGGTAGAAAACAAGGTCCATTCATTTTTGGTTGGCGATGCTAATCATCCTGAGGTGCGACAAATTTACAATTACCTTGAGCAACTGGTCTTGGAA ATGAGAAAGATAGGGTATGTGCCTGACACAAAGTATGTGTTGCATGATGTGGAATCTGATCTAAAGGAACATGAGTTGTCTACTCATAGTGAGAAGCTCG CAGTTGCTTATGGATTTATGAAACTTCCCCATGGAGCTACGGTCAGGGTTTTTAAGAATCTTAGGATCTGTGGTGATTGCCACAATGCCTTCAAGTTTAT GTCAAAAGTTGTGGGAAGAGAAATTATAGTGAGAGATGGAAAGAGGTTTCATCACTTTAGGGATGGTAAATGCTCTTGTGGCGATTACTGGTAG
AA sequence Show only first row Show all	>Potri.002G027800.1 pacid=42777189 polypeptide=Potri.002G027800.1.p locus=Potri.002G027800 ID=Potri.002G027800.1.v4.1 annot-version=v4.1 MTTPDSIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRK IFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASP SAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCA NAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGL AQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAA LGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEAL LAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLE MRKIGYVPDTKYVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIIVRDGKRFHHFRDGKCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	0	1
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	1.41	0.9114
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	1.73	0.9230
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G215500 [exp]	2.23	0.8826
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	5.00	0.8608
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	6.92	0.8956
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	9.16	0.8749
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	9.79	0.8797
					Potri.001G247100 [exp]	10.09	0.8344
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	10.24	0.8813
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	10.39	0.8893

Compare expression of checked genes

Potri.002G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.