Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05150 1226 / 0 Calcium-binding tetratricopeptide family protein (.1) AT2G32450 1199 / 0 Calcium-binding tetratricopeptide family protein (.1) AT3G04240 70 / 4e-12 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 59 / 9e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56290 49 / 2e-05 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT4G12400 45 / 0.0002 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G54010 44 / 0.0004 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234900 [exp] 1370 / 0 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.013G051400 [exp] 68 / 2e-11 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 67 / 5e-11 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 63 / 7e-10 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 58 / 2e-08 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G473100 [exp] 48 / 3e-05 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.011G170000 [exp] 47 / 4e-05 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G119500 [exp] 46 / 9e-05 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.013G128900 [exp] 46 / 0.0001 AT1G17680 711 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033182 [exp] 1254 / 0 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10010627 [exp] 1104 / 0 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10030122 [exp] 86 / 2e-20 AT1G05150 91 / 3e-23 Calcium-binding tetratricopeptide family protein (.1) Lus10003576 [exp] 77 / 6e-14 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 72 / 2e-12 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 71 / 4e-12 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038571 [exp] 61 / 9e-12 AT2G32450 62 / 2e-13 Calcium-binding tetratricopeptide family protein (.1) Lus10021336 [exp] 61 / 3e-09 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 52 / 2e-06 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027124 [exp] 47 / 4e-05 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.002G027900.1 pacid=42777376 polypeptide=Potri.002G027900.1.p locus=Potri.002G027900 ID=Potri.002G027900.1.v4.1 annot-version=v4.1 ATGACGACGAGAGGGACTAGATCAGAGAAAGTGAAGAGAATTTTCCAACAATTTGACGGGAACCGGGATGGAGGTCTCAACAGAGATGAAATGGCAGCTT TGGTGGTGGCTGTAAATCCTAGAGTTAAATTCAGTGAGGAGCAAATCAATGCGATTCTTGACGAAGTTTTCCGCACTTACGGAGAGTTTATTGATGGGGA GAAAGGGTTAACGTATGATGGTTTGTTGCGTACTTATGATGATGGAGCTGGTGACGTGGACCGTGATTTTGATGCGCTTGAGTTGGAGCTGAATGGTGAT AATAAAGGGAGCTCGATCGAGGTGGAGGCGTCGTCGTCGTCAATTGTGGATGAGAGGGTTATTGAGTCGCAGAAGAAGCAGAGGACGGCTGATTGGGCGG TGTCGCCAAATCACGGGATTGTTTTTGATGACACGTGGAAAATTGTGGATGATTTGGAGATTTTGATTAAGAGATTGAAAGCGAAGCAGGCGAAAGATGG GAAATATAAAGCTGATAATTTTGATGCGTTTTCAGATGCTGGGTGGTCGAGGGAATTGGGGCCATCTTCGGAGATCTCGGATAAGAGGGTGTTTTGGGAA GAGTCCGGGAGTGATTATGCACTTTTTGTGAAAGAATTGGGGGTTTTGAGGAGCAGAGCTGATGGAGCGAGATCAAGAGAAGAGGCATTTGATGGGCATA TGGCAATTGGAAGGGTTTTGTATGATCATCAGTTGTTCAAGGAGGCGTTGGTTAGTTTTAAGAGAGCTTGTGAGTTGCAGCCGGTGGATGTTAGGCCACA TTTTAGAGCTGGGAATTGTTTATATGTGCTTGGAAAGTATAAAGAGGCTAAAGAGGAGTTTTTGTTGGCCTTGGAGGCAGCGGAGGCAGGTGGGAATCAA TGGGGTTATTTGCTTCCTCAGATTTATGTAAATCTCGGGATTGCGCTGGAAGGTGAAGGCATGGTTTTAAGTGCTTGTGAGTATTATAGAGAAGCTGCTA TTCTTTGTCCAACTCATTTTAGAGCTCTGAAACTTTTGGGTAGTGCTCTTTTTGGGGTAGGGGAATATAAGGCTGCTGTTAAGGCCTTGGAAGAGGCTAT TTTTATGAAACCAGACTTTGCTGATGCTCATTGTGATTTAGCCTCTGCTTTACATGCCATGGGTGACGATGAGAAGGCAATAGAGGTGTTTCAAAAGGCA ATTGATTTGAAACCTGGCCATGTGGATGCTTTGTATAATTTAGGCGGGCTGTACATGGATCTGGGTAGGTTTCAGAGAGCTTCTGAGATGTATACCAGGG TTTTAGCTGTCTGGCCAAACCACTGGCGGGCTCAGCTTAATAGGGCTGTCTCGTTGTTGGGGGCTGGGGAGACAGAGGAAGCTAAGAAAGCTTTGAAGGA AGCATTGAAATTGACAAATAGGGTTGAATTGCATGATGCAATATCACATTTGAAGCAGATACAGAAGAAGAAAGTAAAGGGCAATGGGGGTGCCAATGGG GAGGGAGTGTTTGTCATTGTAGAACCTTCAAAATTTAAGAGACTGAATGACAAAACTACATTGAGGCAGGATTTAGCTAATGCTCTTCAAATCAGGGCGT TTCAGAGGATTACCAGGTTGAGTCGATGTGACGTGGAGCTTTTGAAGAAGGAAATGAGTGAAAATGATGTACCAGTATCTTATTCTGGTGGCGGTGTTCC TGAGAAATCAATACGCAAACCTAACTTAGAGGAAGTTTTGAGGCGGTTGCTTAATTTTCTGAAGCCTGAAACCTTCCAGGGGGCTGTCAAGGCCATAAAT GAGAGGATCCTCTCTGTTTTTGATGAGACAGGCCAAGGCAGGGTGGATTTAGGCATGTTCTATGCCATTCTTGCCCCCATTTGCAGTGGCAATCCTGAAA AGCGAAAACGGGTTGCTTTTGATGCACTCTTATGGCGTCCTGTGAGTGAAAGTGGTTCTCAGATTAAGGCGGCTGATGCTGTCACTTTCATCAAGTTTCT GAGGGCTATTTATGTTCCCTCTCACGGAGTTAGTGAAATGCTAGAGGTTCATGGAGAAGCAGATTCTTCAATGGTGTCTTTCAAGGAGTTTCTTGTGATG TTCGATGATCCTGATTGGGGCTTTGGTATTATGTCAACTCTGATGAAGCTCGAATCTGGGGATAGGAACCGCCATGGACACTATGTTTGCTCTGTTTGCC GCTACCCGATTATTGGTTCCCGCTTCAAGGAGATAAAATCTCATTTTAGTCTATGTAACCAGTGCTACAGTGAGGGGAAGGTGCCTCCCGCATTTAAGCA GGATGAGTACATATTCAAAGAGTATGGAAGTGAGGCTGAAGCAATGAAAGATAAGTGCACCTGTCTCCCTTTGCAATCTCACAATGATCGGTAA
AA sequence Show only first row Show all	>Potri.002G027900.1 pacid=42777376 polypeptide=Potri.002G027900.1.p locus=Potri.002G027900 ID=Potri.002G027900.1.v4.1 annot-version=v4.1 MTTRGTRSEKVKRIFQQFDGNRDGGLNRDEMAALVVAVNPRVKFSEEQINAILDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGDVDRDFDALELELNGD NKGSSIEVEASSSSIVDERVIESQKKQRTADWAVSPNHGIVFDDTWKIVDDLEILIKRLKAKQAKDGKYKADNFDAFSDAGWSRELGPSSEISDKRVFWE ESGSDYALFVKELGVLRSRADGARSREEAFDGHMAIGRVLYDHQLFKEALVSFKRACELQPVDVRPHFRAGNCLYVLGKYKEAKEEFLLALEAAEAGGNQ WGYLLPQIYVNLGIALEGEGMVLSACEYYREAAILCPTHFRALKLLGSALFGVGEYKAAVKALEEAIFMKPDFADAHCDLASALHAMGDDEKAIEVFQKA IDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNRAVSLLGAGETEEAKKALKEALKLTNRVELHDAISHLKQIQKKKVKGNGGANG EGVFVIVEPSKFKRLNDKTTLRQDLANALQIRAFQRITRLSRCDVELLKKEMSENDVPVSYSGGGVPEKSIRKPNLEEVLRRLLNFLKPETFQGAVKAIN ERILSVFDETGQGRVDLGMFYAILAPICSGNPEKRKRVAFDALLWRPVSESGSQIKAADAVTFIKFLRAIYVPSHGVSEMLEVHGEADSSMVSFKEFLVM FDDPDWGFGIMSTLMKLESGDRNRHGHYVCSVCRYPIIGSRFKEIKSHFSLCNQCYSEGKVPPAFKQDEYIFKEYGSEAEAMKDKCTCLPLQSHNDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05150			Calcium-binding tetratricopept...		Potri.002G027900 [exp]	0	1
AT1G05150			Calcium-binding tetratricopept...		Potri.005G234900 [exp]	2.44	0.8071
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G120700 [exp]	9.59	0.8487
AT3G05900			neurofilament protein-related ...		Potri.005G001700 [exp]	13.89	0.6747
AT1G03350			BSD domain-containing protein ...		Potri.010G028801 [exp]	14.00	0.8077
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	14.14	0.7945
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	19.59	0.8086
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G029800 [exp]	21.63	0.7795
AT5G52280			Myosin heavy chain-related pro...		Potri.015G143800 [exp]	23.36	0.8020
AT1G18190		GC2	golgin candidate 2 (.1)		Potri.015G039800 [exp]	34.69	0.7761
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.005G172800 [exp]	35.72	0.7641	Pt-PIP5.1

Compare expression of checked genes

Potri.002G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.