Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-COL6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75540 250 / 9e-82 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G39070 179 / 5e-55 CO B-box zinc finger family protein (.1) AT1G06040 137 / 8e-40 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT1G78600 139 / 8e-39 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT2G31380 129 / 1e-35 CO STH salt tolerance homologue (.1) AT4G10240 115 / 3e-31 CO B-box zinc finger family protein (.1) AT4G38960 100 / 2e-25 CO B-box type zinc finger family protein (.1.2.3) AT2G21320 99 / 6e-25 CO B-box zinc finger family protein (.1) AT2G24790 82 / 2e-18 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G15850 82 / 1e-17 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234500 [exp] 467 / 2e-167 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.004G161000 [exp] 216 / 6e-70 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.009G122000 [exp] 197 / 2e-62 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.011G105400 [exp] 141 / 9e-40 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.007G130100 [exp] 138 / 3e-39 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.001G384000 [exp] 139 / 4e-39 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.017G028300 [exp] 137 / 6e-39 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.017G028301 [exp] 137 / 6e-39 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.004G162600 [exp] 98 / 2e-24 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028791 [exp] 203 / 1e-64 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10017495 [exp] 199 / 5e-63 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10042498 [exp] 140 / 2e-39 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10038147 [exp] 140 / 2e-39 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10010629 [exp] 142 / 1e-37 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10033184 [exp] 127 / 5e-35 AT1G75540 122 / 7e-33 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10025579 [exp] 127 / 6e-35 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10027041 [exp] 127 / 7e-35 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10035472 [exp] 97 / 9e-24 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10031087 [exp] 96 / 1e-23 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G028200.1 pacid=42779536 polypeptide=Potri.002G028200.1.p locus=Potri.002G028200 ID=Potri.002G028200.1.v4.1 annot-version=v4.1 ATGAAGATCCAGTGCGATGTGTGTAACAAAGAAGAGGCATCGGTGTTTTGCACCGCTGACGAGGCAGCTCTTTGCGACACCTGTGACCACCGTGTTCACC ATGCCAACAAGCTTGCTTCAAAGCACCAACGTTTTTCCCTTCTCCATCCTTCCTCAAAAAACTTCCCCATCTGTGATATCTGCCAGGAGAAACGGGCTTT CTTGTTCTGTCAACAAGACAGGGCGATTTTATGTAGAGAGTGTGATGGTCCAATACACACAGCAAACGAGCATACCCAGAAGCACAACAGGTTTCTTCTC ACAGGAGTCAAGCTCTCTGCTACATCTGCTGTTTATATATCTTCTTCCTCTGTCACCAACAGTGGTGGTGATCTCGTTCCTGATTCAAAGTCTCAACAGC AGCAGCAGCAGCAGCAATCAATCAAGAAACCTGTGTTTGATGCTCCAGTGAATTCCAATCCACCTACAGTTCCCAGTACCTTATCTACAAACACAGAAGT AAACAAGGGTGGGGATAATTTGGTAACAAATGAAGGGTTTGGTTCAACAACAAGTAGTACTATATCAGAGTACTTGATGGAGACTCTTCCTGGCTGGCAT GTTGAAGACTTTCTTGATTCCTCTACTACTCCCTTTGGTTTCTGTAAGATTGATGATGGTCTATTGCCGTTTATGGATGCTCATGATCTTGAGAGCAACA TGAGTTCTTTCTCATCAGAAAGTTTGGGGCTTTGGGTCCCTCAAGCACCATCTACTCCATACACATCTCAACAGTATTATTATCCACAGTTGGTAGGGCA AAGTGGGTTCAAGGAGATAAAAGAGACCACAAACATGAAAGCTAACAGAAGGTTGGCAGATGATGTCTTCACTGTTCCACAGATCAGCCTCCCGGCCAAT ATAAGCTCTAAGAGATCTAGGCCCTTATGGTAG
AA sequence Show only first row Show all	>Potri.002G028200.1 pacid=42779536 polypeptide=Potri.002G028200.1.p locus=Potri.002G028200 ID=Potri.002G028200.1.v4.1 annot-version=v4.1 MKIQCDVCNKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHPSSKNFPICDICQEKRAFLFCQQDRAILCRECDGPIHTANEHTQKHNRFLL TGVKLSATSAVYISSSSVTNSGGDLVPDSKSQQQQQQQQSIKKPVFDAPVNSNPPTVPSTLSTNTEVNKGGDNLVTNEGFGSTTSSTISEYLMETLPGWH VEDFLDSSTTPFGFCKIDDGLLPFMDAHDLESNMSSFSSESLGLWVPQAPSTPYTSQQYYYPQLVGQSGFKEIKETTNMKANRRLADDVFTVPQISLPAN ISSKRSRPLW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.002G028200 [exp]	0	1	Pt-COL6.2
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	1.00	0.9394
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128000 [exp]	4.47	0.9117
AT5G19875			unknown protein		Potri.001G009200 [exp]	4.47	0.9199
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G125900 [exp]	6.32	0.8959
AT2G16385			unknown protein		Potri.009G119900 [exp]	6.32	0.9206
AT4G23050			PAS domain-containing protein ...		Potri.003G122700 [exp]	6.78	0.8918
AT2G35790			unknown protein		Potri.008G042800 [exp]	7.48	0.8861
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026500 [exp]	7.74	0.9178
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007900 [exp]	7.74	0.9219
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025800 [exp]	8.48	0.9133	CYP83F2

Compare expression of checked genes

Potri.002G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.