Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54350 333 / 2e-102 FHA EMB1967 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) AT1G75530 197 / 5e-54 FHA Forkhead-associated (FHA) domain-containing protein (.1) AT1G60700 137 / 8e-34 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234300 [exp] 1333 / 0 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G117900 [exp] 224 / 1e-61 AT3G54350 208 / 5e-57 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.007G016900 [exp] 218 / 9e-60 AT3G54350 206 / 1e-56 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033185 [exp] 666 / 0 AT3G54350 292 / 4e-87 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10010629 [exp] 656 / 0 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10028358 [exp] 201 / 5e-54 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10041808 [exp] 177 / 3e-46 AT3G54350 191 / 1e-51 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain CL0357 [poplar] [flax] PF13325 [poplar] [flax] MCRS_N N-terminal region of micro-spherule protein
Representative CDS sequence Show only first row Show all	>Potri.002G028300.1 pacid=42780094 polypeptide=Potri.002G028300.1.p locus=Potri.002G028300 ID=Potri.002G028300.1.v4.1 annot-version=v4.1 ATGGGAGCTCTCGGCCCTGTCTCTCCTTGGATTCCAGAAGATGACGTTTTGTTAAAAAACTCTATTGAGGCTGGTGCTTCCTTGGAATCACTGGCAAAAG GAGCAGTACAATTTTCTCAAAAATTCACTGTTCGAGAAATACGAGATCGGTGGTATTCTCTCCTTTATGATCCGGTTGTTTCTTCAGAGGCTGCTTTTCA CATGACTGAGTTTGAGTGTTCTGCATCGACTTTTCCATCAAAATTCAGTAGAGCTGGAAATTCAAAAGAAAATAAATGTTTTTCAGGGAAGAGGAAAACT GAAAGTGTCCGCCATTGTTACTATGCTCCGCGTAAAAGAATTTGCAGCAAACCATTTAATTCCATGGAGTTGAGTTTTCTTGATTCCCCCAATAATAACA ATTATGTTGGCAATGAATATGAGCAATTATCCACACAATGCATGCTTGGAGATCCAGTTACAACTCACTTCGCACTTCAGGAATCAAATTTGGACATGAT GCATCATGTGTTTCCTCCAATTGTGAGTAGTGGTACTGCCCATGCCTTTGATACTGAATTCCATAATACAATTCAAGAAGATTATTCAATGGAGCAAGAC AATATACACATTCCCCATATACTTGGAGAGGATCCATCTAACACTGAAAACAGAACCGTGGTCGAGGAACTCAGTCAACAACTGCCAGTTGATGATGACT TGTTACATGGGTGCTCTAACTTTGATGGAAATGATGTTCTTAGTTCACCAGTTCCAGAGTGTAGTTTGTCATTTCACAATTTGGAGTTCTCTTCTCCACT TCCTGAGATGCCTATTTGGAGAATGGATGAAGGGATTTCAGTGCCAGATATTCCAAACAATCTTGGATTACATGACAAAGATATGCACCATGGTGATGCT TTTTCACTCCTTGATGATGGTGATATTAAGAATGCATGTTCGACAAGTTTCGATGATCTCCAAAAAGACTCAGAGTTAAAAATGGAAATACTGAGTGATG TGCCACAAAATTCATCTCATAGCACAGAAGATTTTCTGGCTGAACTTACCAATTATTTGTCTAATGACGAGGAAGGGGCAAGTGTGGATATGGATGGAAA AGATTTCAGCACCAATTCTTACATTGCTTGTCTCAATACAATTTTGTTGGATTCACCAAATAATTCTAACGAAAATCACAGGCCCAATGTAACTGAACCA GAAGCATCAATATCAGCAGACTGTTCTAAAAATCACTCAGGTGCTTGTCCTGGAAACTTATGGGAGAATAGGGGGTCTCACTGTAGTGTGGATGCAGGTT GTAATTCTGAGTTCCAGTTTGTTTCATCAACATCACTTCTAGATCCGCATCCTGAGGTGAAAGATGGGATTATTTGCTGTGTGCTAAACACTGAGGACAC AGAGATCCCATTCAATGATGATATAGACCTCCCCACTGACTGGCGCCCAAGATCAGTTACCTCCTTGGTGCAAAGGAATTTCCAACATGCTGGCAAACCA AATTCTTTATCTGCTAAGGAATTACCGAGTAATAAAATAGGTAGTGTAGTTTCAGTAGTCGCTCACAGGGATCTAGAAAATCCTGGACAATTGCTTGCAT CTTCTCAGATGGTAAGATTACAGGCGATGCCAGAACCTGGTCCAGTCCATCCTGTAGGTGATCATAGTTTGAAACTTGAGTTGCCCAGCAGTGACTCCAC TCGTAGGAGTGCAGGTTTTGCTTTTGGTGGCTCAACTCAATTTAACTCAGCAGACACTAAGATGGAAACTCTTGTTCCTACTAAACTGAAGGAAGAAACT ACAGAAACCCCAATGGCCAAGCATATGAGTAATGAATCAGCTGATTCTTTATTAGAGAAGCCGTCTTTGGTTTCTGATTTCTTTACATATCCCCAGACAA ATGTGTCTGCTATTAAACAGGTAGAAGATGCACCAGACAGAGTTCAAAATCATCAAGTATCACATGTGAAAGTGGGCTCTTCAGATTTTGCTTCTTCAGA ACTAGTAGTAAACCATTCAGTATCAGATCCAGCTGAGCCATCTATCCAGAGTGATGATGATGTACCATATTTTTCAGACATTGAAGCAATGATACTTGAT ATGGACTTGGATCCAGAAGACCAGGATTTATATTGCAGCGAGGAAGTCTCAAGATATCGACATGAGGACACGAAGAGGGCAATCATGAGGCTGGAACAGG GTGCTCATTCTTATATGCAAAGAGCTATTGCACGTCATGGAGCATTTGCAGTTATACATGGCCGCCATTCAAAACATTATATTAAGAAATCTGAGGTATT ACTTGGTAGAGCAACAGAAGATGCTATTGTCGACATTGACTTGGGAAGGGAAGGCCGTCGTAATATAATATCTCGACGGCAGGCTACTATAAATTTGGAC AAAAGTGGATCTTTTTATCTGAAAAACCTTGGCAAGTGCTCCCTCTCGGTGAATGACAAGGAAATAGCCCCTGGACAGAGTCTAAGCCTTACTTCTGGTT GTTTGATTGAGATTAGGGGAATGCCTTTCATATTTGAGATAAACCAAACTTGTGTGAAGCATTATCTAGCTAGAAAAACCCAGGAGAACCAAACCTGGGA GCACCTGGTTTGA
AA sequence Show only first row Show all	>Potri.002G028300.1 pacid=42780094 polypeptide=Potri.002G028300.1.p locus=Potri.002G028300 ID=Potri.002G028300.1.v4.1 annot-version=v4.1 MGALGPVSPWIPEDDVLLKNSIEAGASLESLAKGAVQFSQKFTVREIRDRWYSLLYDPVVSSEAAFHMTEFECSASTFPSKFSRAGNSKENKCFSGKRKT ESVRHCYYAPRKRICSKPFNSMELSFLDSPNNNNYVGNEYEQLSTQCMLGDPVTTHFALQESNLDMMHHVFPPIVSSGTAHAFDTEFHNTIQEDYSMEQD NIHIPHILGEDPSNTENRTVVEELSQQLPVDDDLLHGCSNFDGNDVLSSPVPECSLSFHNLEFSSPLPEMPIWRMDEGISVPDIPNNLGLHDKDMHHGDA FSLLDDGDIKNACSTSFDDLQKDSELKMEILSDVPQNSSHSTEDFLAELTNYLSNDEEGASVDMDGKDFSTNSYIACLNTILLDSPNNSNENHRPNVTEP EASISADCSKNHSGACPGNLWENRGSHCSVDAGCNSEFQFVSSTSLLDPHPEVKDGIICCVLNTEDTEIPFNDDIDLPTDWRPRSVTSLVQRNFQHAGKP NSLSAKELPSNKIGSVVSVVAHRDLENPGQLLASSQMVRLQAMPEPGPVHPVGDHSLKLELPSSDSTRRSAGFAFGGSTQFNSADTKMETLVPTKLKEET TETPMAKHMSNESADSLLEKPSLVSDFFTYPQTNVSAIKQVEDAPDRVQNHQVSHVKVGSSDFASSELVVNHSVSDPAEPSIQSDDDVPYFSDIEAMILD MDLDPEDQDLYCSEEVSRYRHEDTKRAIMRLEQGAHSYMQRAIARHGAFAVIHGRHSKHYIKKSEVLLGRATEDAIVDIDLGREGRRNIISRRQATINLD KSGSFYLKNLGKCSLSVNDKEIAPGQSLSLTSGCLIEIRGMPFIFEINQTCVKHYLARKTQENQTWEHLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	1.00	0.9265
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	2.00	0.8987
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	3.74	0.8648
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	4.89	0.8818
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	7.74	0.8730
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	9.94	0.8505
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.007G138700 [exp]	10.95	0.8232
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.013G081400 [exp]	11.13	0.8278
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	11.48	0.8672
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.005G225300 [exp]	12.96	0.8314

Compare expression of checked genes

Potri.002G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.