Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21410 1187 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT4G39080 1167 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G28520 1001 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234100 [exp] 1476 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1) Potri.009G121400 [exp] 1186 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.004G160400 [exp] 1169 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024304 [exp] 1267 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10002104 [exp] 1216 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10017490 [exp] 1149 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10028796 [exp] 1067 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10036133 [exp] 1037 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10018129 [exp] 1035 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 96 / 2e-23 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [poplar] [flax] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Potri.002G028600.1 pacid=42779575 polypeptide=Potri.002G028600.1.p locus=Potri.002G028600 ID=Potri.002G028600.1.v4.1 annot-version=v4.1 ATGGGCGACGGGATTTTTGGCCCAACCATGGATCTGATGCGATCGGAGCCGATGCAATTAGTGCAACTTATCATTCCTATCGAGTCAGCTTATCGCACCA TTTCTTATCTCGGTGACCTCGGCCTCTTCCAATTCAATGATCTTAATGCGGAAAAGAGTCCGTTCCAACGGACGTATGCTGCTCAGATTAAAAGATGCGC AGAAATGGCTCGCAAGCTACGTTTCTTCAAGGAGCAAATGAAAAAGGCTGGGTTGTCACCGACAAAATCTTTAAGAAGTAGTGATGTTGATCTGGATCGT TTGGAGGTGGCGCTTGGAGAACTGGAATCGGAGCTGATAGAGATAAATTCGAATAATGAAATGCTACAGCACACTTACAATGAACTATCAGAATATAAGC TTGTCTTGCAGAAGGCTGGTGAACTTTTTCACTCTGCTCAAAGCAGTGTTGCAGCTCAGCAGAGTGAACTTGAAGCATATAACACTGCTGAAGCATCCAT TGACAGTGCATTATTGTTGGAGCAAGAAATGACAATGGATCCATCAAAGCAAGTTAAGCTGGGGTATATCAGTGGTCTTGTTGCAAGAGAAAAGGCAATG GCTTTTGAAAGGATTTTGTTTCGAGCAACTAGGGGCAATGTCTTTTTGAAGCAATCCGTGCTTGAAAATGCTGTTGTTGATCCCGTGTCAGGGGACAAGG TTGAAAAAAATGTATTCATTGTCTTCTATTCTGGTGAAAGAGCAAAGAACAAGATTCTTAAACTCTGTGAAGGTTTTGGAGCAAATCGCTACCCATTTAT GGAGGACCTAAACAAACAGTTTCAGATAATTTCTCAGGTGTCTGGAAGACTTGCTGAGCTTAAAACTACTATAGATGCTGGGTTGGCGCACTGGAGCAAT TTGTTACAAACCATTGGCTTTGAGTTTGAGCAGTGGAATTTTCTGGTGAAGAAGGAAAAATCTATTTACCACACTTTAAATATGCTCAACATGGATGTGA CAAAGAAGTGTCTTGTTGCTGAAGGTTGGTGCCCAGTTTTTGCAACAGATCAGATACAAAATGGACTACGGCGAGCGACTTTAGACAGCAGCTCACAAAT TGGAGCCATATTCCATGTTTTGCAGACAAAGGATTCACCCCCTACCTATTTCCGAACAAACAAATTTACTTCTGCTTTTCAAGAAATTGTAGATGCATAT GGGGTTGCCAAGTACCAGGAAGCAAATCCTAGTGTATACACAATTGTCACATTTCCCTTCCTCTTTGCTGTTATGTTTGGTGATTGGGGCCATGGTATTT GCTTGCTGTTGGCAACATTATATTTTATTTTCAGGGAAAAGAAACTTTCCAGTCAGAAGCTTGGAGACATTATGGAAATGGCTTTCAGTGGCCGTTATGT GATAATGATGATGGCAATTTTTTCAATCTACACGGGGTTGATATACAATGAATTCTTTTCGGTTCCATTTGAGCTGTTTGGGCTGTCAGCCTATGGGTGT CGTGACCAGTCTTGCGGGGATGCTTCTACTGCTGGTCTAGTCAAGGTTCGTGCCACTTATCCATTTGGTTTGGATCCTAAATGGCATGGTACCCGGAGCG AGTTACCTTTTCTTAACTCGATGAAGATGAAGATGTCAATTTTATTTGGAGTGGCCCAGATGAATCTTGGTATCATAATAAGTTACTTCAATGCAAAGTT CTTCGGAGATAACATAAATATCTGGTATCAATTTGTGCCCCAGATGATTTTCTTAAACAGCTTGTTTGGTTACCTTTCGCTCCTCATAATAGTGAAATGG TGCACTGGTTCACAAGCTGATCTATACCATGTGATGATATACATGTTTCTAAGTCCCACTGATGATTTGGATGACAATCAGCTTTTTTTCGGCCAGAAAT TTTTTCAGATCTTGTTGCTACTATCAGCCCTTGCTGCTGTCCCATGGATGTTGTTTCCAAAGCCTTTTCTATTGAAGAAACAACATGAGGAAAGGTTCCA AGGTCAATCATATGCACGGCTGGACAGCAGTGATTACTCTCCTGAAGTCGAGCAGCATTCTGTTTCTCATAACCATGAGGAATTCGAGTTCAGCGAGGTG TTTGTTCACCAGCTTATACATACCATAGAGTTTGTGCTCGGAGCAGTGTCGAATACGGCTTCATATTTACGTTTATGGGCCCTCAGTCTGGCCCATTCAG AGCTAGCAAGTGTATTCTATGACAAGGTTCTTCTTCTATCCTGGGGGTACAACAGCATCTTAGCTCGCAGTATTGGCTTGATTGTATTTATATTTGCAAC TGTTGGTGTCCTACTAGTGATGGAGACCCTTAGTGCATTCCTACATGCCTTGAGGCTTCATTGGGTAGAGTTTCAAAACAAATTTTACGTGGGAGATGGA TACAAATTCTATCCATTTTCATTTGCTTCGCTTGGTGAAGATGATGAATGA
AA sequence Show only first row Show all	>Potri.002G028600.1 pacid=42779575 polypeptide=Potri.002G028600.1.p locus=Potri.002G028600 ID=Potri.002G028600.1.v4.1 annot-version=v4.1 MGDGIFGPTMDLMRSEPMQLVQLIIPIESAYRTISYLGDLGLFQFNDLNAEKSPFQRTYAAQIKRCAEMARKLRFFKEQMKKAGLSPTKSLRSSDVDLDR LEVALGELESELIEINSNNEMLQHTYNELSEYKLVLQKAGELFHSAQSSVAAQQSELEAYNTAEASIDSALLLEQEMTMDPSKQVKLGYISGLVAREKAM AFERILFRATRGNVFLKQSVLENAVVDPVSGDKVEKNVFIVFYSGERAKNKILKLCEGFGANRYPFMEDLNKQFQIISQVSGRLAELKTTIDAGLAHWSN LLQTIGFEFEQWNFLVKKEKSIYHTLNMLNMDVTKKCLVAEGWCPVFATDQIQNGLRRATLDSSSQIGAIFHVLQTKDSPPTYFRTNKFTSAFQEIVDAY GVAKYQEANPSVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIFREKKLSSQKLGDIMEMAFSGRYVIMMMAIFSIYTGLIYNEFFSVPFELFGLSAYGC RDQSCGDASTAGLVKVRATYPFGLDPKWHGTRSELPFLNSMKMKMSILFGVAQMNLGIIISYFNAKFFGDNINIWYQFVPQMIFLNSLFGYLSLLIIVKW CTGSQADLYHVMIYMFLSPTDDLDDNQLFFGQKFFQILLLLSALAAVPWMLFPKPFLLKKQHEERFQGQSYARLDSSDYSPEVEQHSVSHNHEEFEFSEV FVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELASVFYDKVLLLSWGYNSILARSIGLIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYVGDG YKFYPFSFASLGEDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	0	1
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	2.23	0.9616
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	4.58	0.9505
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.006G214000 [exp]	5.19	0.9431
AT2G14835			RING/U-box superfamily protein...		Potri.001G294200 [exp]	5.38	0.9286
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	5.65	0.9472	Pt-POK.1
AT1G53290			Galactosyltransferase family p...		Potri.011G111700 [exp]	6.16	0.9556
AT1G50120			unknown protein		Potri.007G071000 [exp]	6.32	0.9466
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Potri.011G123900 [exp]	9.89	0.9198
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	11.53	0.9436
AT4G24840			unknown protein		Potri.015G094000 [exp]	12.00	0.9433

Compare expression of checked genes

Potri.002G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.