Plant FIBer expression Database

Potri.002G028900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75510 345 / 7e-121 Transcription initiation factor IIF, beta subunit (.1)
AT3G52270 282 / 1e-95 Transcription initiation factor IIF, beta subunit (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G233800
[exp]
457 / 7e-165 AT1G75510 354 / 3e-124 Transcription initiation factor IIF, beta subunit (.1)
Potri.010G219800
[exp]
303 / 1e-103 AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033190
[exp]
379 / 1e-133 AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1)
Lus10010631
[exp]
378 / 2e-133 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1)
Lus10040084
[exp]
337 / 2e-117 AT3G52270 322 / 3e-111 Transcription initiation factor IIF, beta subunit (.1)
Lus10030963
[exp]
317 / 5e-110 AT3G52270 303 / 1e-104 Transcription initiation factor IIF, beta subunit (.1)
Lus10023502
[exp]
314 / 5e-107 AT3G52270 294 / 4e-99 Transcription initiation factor IIF, beta subunit (.1)
Lus10040384
[exp]
246 / 7e-82 AT3G52270 226 / 9e-74 Transcription initiation factor IIF, beta subunit (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF02270 TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence
>Potri.002G028900.3 pacid=42778059 polypeptide=Potri.002G028900.3.p locus=Potri.002G028900 ID=Potri.002G028900.3.v4.1 annot-version=v4.1
ATGGAGGAAGATCACAGTAATGGTGGAAATAGCAGCAGCAGCGGTAATTTAGAAACATCGAAGGCTGATAAAGCTGTTTGGCTAATGAAGTGTCCAGTAG
TGGTTGCAAAGTCATGGAAGAGTCATCATACCTCTTCTTCAGATTCTGCTCCGCTCGCTAAAGTCGTTCTCTCCCTCGATCCTCTCCAATCTGACGATCC
CTCTGCTATTCAGTTCACTATGGAGATGGCTCGCACTGAGACTGGGAATGTGCCGAAGAGTTATTCTTTGAATATGTTTAAGGACTTTGTTCCGATGGGT
GTCTTTTCGGAGACACCTCAAGGGAGGGTTTCCATGGAAGGAAAAGTTGAACATAAATTTGACATGAAGCCTCACGAGGAAAACATTGAGGAATATAGTA
AATTATGCCGTGACAGGACGAAAAAGTCTATGATCAAGAATAGGCAGATACGGGTGATTGATAATGACCGTGGGGTGCACATGAGGCCCATGCCTGGAAT
GGTCGGCCTGATTTCATCTACCTCCAAGGATAAGAAGAAAACACAACCAGTTAAACAATCAGATGTGAAGAGAACCAGGAGGGATCGTGGTGAATTGGAG
GATATCATGTTCAAGTTATTTGAAAGGCAACCAAATTGGGCCTTAAAGCAGCTTGTTCAAGAAACAGATCAACCTGCGCAATTCTTGAAAGAGATACTGA
ATGAGCTTTGTGTGTACAATAAGCGGGGAACAAACCAAGGAACTTATGAGCTAAAACCAGAATATAAGAAAACTGCTGAGGATACAGGTGCTGATTAA
AA sequence
>Potri.002G028900.3 pacid=42778059 polypeptide=Potri.002G028900.3.p locus=Potri.002G028900 ID=Potri.002G028900.3.v4.1 annot-version=v4.1
MEEDHSNGGNSSSSGNLETSKADKAVWLMKCPVVVAKSWKSHHTSSSDSAPLAKVVLSLDPLQSDDPSAIQFTMEMARTETGNVPKSYSLNMFKDFVPMG
VFSETPQGRVSMEGKVEHKFDMKPHEENIEEYSKLCRDRTKKSMIKNRQIRVIDNDRGVHMRPMPGMVGLISSTSKDKKKTQPVKQSDVKRTRRDRGELE
DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKTAEDTGAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G75510 Transcription initiation facto... Potri.002G028900
[exp]
0 1
AT1G24560 unknown protein Potri.008G184600
[exp]
1.00 0.8893
AT5G13340 unknown protein Potri.019G001900
[exp]
4.89 0.8475
AT1G11330 S-locus lectin protein kinase ... Potri.005G014802
[exp]
8.60 0.8654
AT3G53030 SRPK4 ser/arg-rich protein kinase 4 ... Potri.006G117800
[exp]
10.09 0.7989
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.015G130701
[exp]
12.48 0.8486
AT4G02220 zinc finger (MYND type) family... Potri.002G201200
[exp]
20.00 0.8045
Potri.003G116450
[exp]
23.00 0.8194
Potri.013G064900
[exp]
28.14 0.8336
AT3G21175 GATA GATA24, TIFY2B,... ZIM LIKE 1, GATA TRANSCRIPTION... Potri.017G042200
[exp]
29.03 0.7362
AT1G74690 IQD31 IQ-domain 31 (.1) Potri.012G069900
[exp]
30.85 0.8449

Potri.002G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.