Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) AT1G61150 82 / 3e-19 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT1G35470 70 / 8e-14 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 55 / 6e-09 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT5G09630 43 / 9e-05 LisH/CRA/RING-U-box domains-containing protein (.1) AT4G09310 41 / 0.0003 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 41 / 0.0003 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233000 [exp] 308 / 8e-108 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.011G046200 [exp] 84 / 9e-20 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.004G037600 [exp] 82 / 5e-19 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.013G108400 [exp] 67 / 7e-13 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.019G080800 [exp] 60 / 1e-10 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004152 [exp] 320 / 2e-112 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10005633 [exp] 318 / 1e-111 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10011219 [exp] 81 / 2e-18 AT1G61150 392 / 6e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10018464 [exp] 81 / 3e-18 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10009451 [exp] 69 / 1e-13 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 67 / 1e-12 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 42 / 0.0003 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002832 [exp] 40 / 0.0007 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [poplar] [flax] CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence Show only first row Show all	>Potri.002G029700.6 pacid=42777073 polypeptide=Potri.002G029700.6.p locus=Potri.002G029700 ID=Potri.002G029700.6.v4.1 annot-version=v4.1 ATGGATGTTGATCCTCGTCACTACGAACAAATTGCCATCAAAGATAGTGATATCCACAATATTGTGCTATCCTATCTGGTGCACAATTGCTATGGAGAAA CTCTGGAATCGTTCGTGGCTTGTTCCGGGATGCCTGAGCCTGCAGATTTTATCGAGGATATGGAGAAAAGAAAAGGAATTGTCCGTTGTGCTTTAGAGGG GAATGCACTCAAGGCAGTTGAGCTGACAGAACAGGTGGCAGGTGACTTACTGGAGAATAACAAGGACTTGCATTTTGATCTTTTGAGCCTTCATTTTGCC GATCTTGTTTGTGCTAAGAAGTGCACGGAAGCTTTGGAATTTGCTCAAAAGAAGTTGACACCATTTGGGAAGGAGAAGAAGTACGTTGAAAAACTTGAAG ACTTTATGGCTCTGCTTGCTTACGAGGAACCTGAAAAATCACCAGTGTTTCATCTGCTTGGCTTGGAGTACCGTCAGCATGTAGCAGATAAATTGAATCG GGCTATTCTTGCTCATACAAACTTGCCAAGCTACACAGCAATCGAGAGGCTGATACAACAGACCACAGTAGTCAGGCAAAGCTTAAATCAAGATCACGGT AAGGATGGGATTCCACTATTTTCTCTGAAAGACTTTCTCAAAGGCTAG
AA sequence Show only first row Show all	>Potri.002G029700.6 pacid=42777073 polypeptide=Potri.002G029700.6.p locus=Potri.002G029700 ID=Potri.002G029700.6.v4.1 annot-version=v4.1 MDVDPRHYEQIAIKDSDIHNIVLSYLVHNCYGETLESFVACSGMPEPADFIEDMEKRKGIVRCALEGNALKAVELTEQVAGDLLENNKDLHFDLLSLHFA DLVCAKKCTEALEFAQKKLTPFGKEKKYVEKLEDFMALLAYEEPEKSPVFHLLGLEYRQHVADKLNRAILAHTNLPSYTAIERLIQQTTVVRQSLNQDHG KDGIPLFSLKDFLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06060			LisH and RanBPM domains contai...		Potri.002G029700 [exp]	0	1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	2.00	0.6230
AT3G44510			alpha/beta-Hydrolases superfam...		Potri.009G164600 [exp]	8.48	0.5366
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.001G390200 [exp]	9.16	0.5927
AT1G36980			unknown protein		Potri.005G171901 [exp]	14.28	0.6273
AT4G31410			Protein of unknown function (D...		Potri.006G275400 [exp]	16.70	0.5632
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G077400 [exp]	19.05	0.5092
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.002G030800 [exp]	21.74	0.5597
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	26.03	0.5701
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.009G044500 [exp]	27.11	0.5975	ATPH1.1
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	40.74	0.5307

Compare expression of checked genes

Potri.002G029700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.