Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75460 373 / 4e-131 ATP-dependent protease La (LON) domain protein (.1) AT1G19740 358 / 4e-125 ATP-dependent protease La (LON) domain protein (.1) AT1G18660 80 / 1e-16 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232800 [exp] 451 / 4e-162 AT1G75460 366 / 2e-128 ATP-dependent protease La (LON) domain protein (.1) Potri.012G068100 [exp] 79 / 2e-16 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.013G105500 [exp] 47 / 5e-06 AT1G35340 285 / 1e-94 ATP-dependent protease La (LON) domain protein (.1), ATP-dependent protease La (LON) domain protein (.2), ATP-dependent protease La (LON) domain protein (.3), ATP-dependent protease La (LON) domain protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024294 [exp] 335 / 8e-118 AT1G75460 313 / 2e-109 ATP-dependent protease La (LON) domain protein (.1) Lus10006131 [exp] 186 / 7e-60 AT1G19740 176 / 1e-56 ATP-dependent protease La (LON) domain protein (.1) Lus10015722 [exp] 81 / 9e-17 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 71 / 1e-13 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF02190 [poplar] [flax] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G029900.1 pacid=42779838 polypeptide=Potri.002G029900.1.p locus=Potri.002G029900 ID=Potri.002G029900.1.v4.1 annot-version=v4.1 ATGGCTCTTCCACAGCTAATTTCCACTCACAAACCCTCGTTAAAACCCAACACCACCGCTCTTTCCTCATTAAACCCTAACAATCTCAATTCCCTCTCCA AATTGTCATCATCACTTGACTCGCTCCTCCACAGTGGCCGCCAAAAACGGCGAGCCGCCTCATTAAAATGCTCGGCCTCATCATTCTCCGAGAAACACCA CAACACAAACCATCCAAAATCAGACGACGTCGTTGAACTCCCACTATTTCCACTCCCGCTTGTTCTATTCCCAGGCGCAATCCTCCCTCTACAGATCTTC GAATTCCGTTACCGCATTATGATGCACACCCTCCTCCGCACCGACCTCCGTTTCGGCGTCATCTTCTCCGACGCCGTCTCCGGCACCGCCGAAGTGGGCT GCGTCGGTGAAATCATCAAGCACGAACGCCTCGTTGATGATCGATTCTTCCTCATTTGCAAAGGGCAGGAACGGTTTCGTGTAACCAATATAGTCCGTAC GAAACCTTACCTTGTCGCGGAGGTGACGTGGCTGGAGGACAGGCCGTCAGGGGAGGAGGATGTGGATGCGTTAGCGACGGAAGTGGAGACGCACATGAAG GACGTTATAAGATTGTCGAATAGGTTAAATGGGAAGCCTGAAAAGGAAGCGCAGGATTTGAGACGGAATTTGTTCCCGACTCCGTTTTCATTCTTCGTAG GAAGTACTTTTGAGGGAGCTCCGAGAGAGCAGCAGGCCTTGCTTGAATTGGAGGATACCGCGACGAGGTTGAAGAGGGAGAAGGAGACTTTGAGGAACAC ACTTAATTACTTGTCTGCTGCTTCTGCTGTTAAAGATGCCTTTCCCTCTTCATAG
AA sequence Show only first row Show all	>Potri.002G029900.1 pacid=42779838 polypeptide=Potri.002G029900.1.p locus=Potri.002G029900 ID=Potri.002G029900.1.v4.1 annot-version=v4.1 MALPQLISTHKPSLKPNTTALSSLNPNNLNSLSKLSSSLDSLLHSGRQKRRAASLKCSASSFSEKHHNTNHPKSDDVVELPLFPLPLVLFPGAILPLQIF EFRYRIMMHTLLRTDLRFGVIFSDAVSGTAEVGCVGEIIKHERLVDDRFFLICKGQERFRVTNIVRTKPYLVAEVTWLEDRPSGEEDVDALATEVETHMK DVIRLSNRLNGKPEKEAQDLRRNLFPTPFSFFVGSTFEGAPREQQALLELEDTATRLKREKETLRNTLNYLSAASAVKDAFPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75460			ATP-dependent protease La (LON...		Potri.002G029900 [exp]	0	1
AT3G17670			tetratricopeptide repeat (TPR)...		Potri.015G029700 [exp]	1.00	0.9727
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Potri.005G193400 [exp]	13.63	0.9538	PtrTrxy1
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Potri.008G153400 [exp]	17.94	0.9512
AT5G09995			unknown protein		Potri.010G003700 [exp]	18.43	0.9530
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G071800 [exp]	19.69	0.9536
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.016G103600 [exp]	25.03	0.9497
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.014G102100 [exp]	25.69	0.9517
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Potri.002G066800 [exp]	27.49	0.9341
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.003G030100 [exp]	30.46	0.9505
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.005G245700 [exp]	33.24	0.9453

Compare expression of checked genes

Potri.002G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.