Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19720 985 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G57430 443 / 9e-142 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01030 413 / 1e-131 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G55740 411 / 3e-130 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 408 / 2e-129 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 407 / 4e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 404 / 3e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 398 / 5e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 391 / 4e-122 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 386 / 4e-122 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 464 / 3e-149 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 453 / 2e-144 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G097000 [exp] 451 / 3e-144 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G075800 [exp] 445 / 2e-142 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 438 / 4e-139 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 426 / 2e-135 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 419 / 1e-132 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 419 / 3e-131 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 415 / 3e-129 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001230 [exp] 1015 / 0 AT1G19720 890 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014707 [exp] 452 / 2e-144 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 449 / 1e-143 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 435 / 8e-138 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 431 / 5e-137 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 431 / 3e-136 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 427 / 1e-135 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040917 [exp] 425 / 5e-133 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 416 / 1e-132 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 407 / 4e-126 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G030200.3 pacid=42778870 polypeptide=Potri.002G030200.3.p locus=Potri.002G030200 ID=Potri.002G030200.3.v4.1 annot-version=v4.1 ATGGAGAACTTAGTAATAATACGAAGCATCTCAAAATCTCCACTAACAACCCAAAGCAAGCAAGAGAGTCAATCAGAATTCTCACAAAAACCCATCAAAT CGTCAATCTCCTTCGCCAAAAATCCTCTCCCAAAATTCATCGACTCCCACTTGGACTCCCTCTGCAAAAACGGAAGCTTAAACGATGCCGTAACAGTTCT TGACTCCGTAGCTCAACAAGGGTCCAAGGTAACACCCAGGACTTACATGAATTTACTCCAATCTTGCATCGACACCAATTCTATTAATCTGGGACGAAAG TTTCATGCTCGGATTAGTGTCGTGCAGGAAAAATCTCCAGTTATCGAAACTAAGTTAGTTAGTATGTATGCGAAATGTGGGTATTTAAGGGATGCACGCA AGGTGTTTGATGAAATGTCTGAGAGAAGTTTGTTCACGTGGTCGGCGATGATCGGTGCGTGTTGTAGAGAGAAGAGGTGGAAGGAAGTTGTGGAGCTTTA TTATATGATGATGAAAGATAATGTTTTGCCTGATGGGTTTTTGTTACCTAAGATATTGCAAGCGGTTGGGAATTGTCGGGATGTAAAGACTGGAGAATTG TTGCATTCTTTTGTGGTTAGATGTGGGATGGGAAGTTCTCCGCGTGTTAATAATTCGATTTTGGCTGTGTATTCAAAGTGTGGGAAGTTGAGTTTAGCGA GGAGGTTTTTTGAGAGCATGGATGAGAGAGATATAGTGGCTTGGAATGCTATGATGTCTGGTTATTGTTTGAAGGGTGAGGTTGAGGAAGCACATCGATT ATTTGATGCAATGTGTGAAGAAGGGATTGAACCGGGTTTAGTTACTTGGAATATATTGATTGCTGGTTATAACCAGAAAGGGCAATGTGATGTTGCGATG AATTTGATGAAGAAGATGGTCAGTTTTGGGGTTAGCCCTGATGTTGTTGCATGGACTTCTATGATTTCGGGGTTTGCTCAAAATAACAGGAACGGTCAGG CGTTGGATTTGTACAAGGAGATGATTTTGGCAGGGGTTGAACCAAATGGAGTTACCATTACGAGTGCTTTATCAGCTTGTGCATCTTTGAAGGTGTTGAA TACGGGGTTGGGAATTCATTCCCTTGCTGTTAAGATGAGTTTTGTTAATGATGTGCTAGTTGGGAATTCACTCATTGACATGTACTCGAAGTGTGGGCAG CTGGGTGCTGCTCAGCTGGTATTTGATTTGATGTCAGAGAAGGATCTTTATACGTGGAACTCAATGATTGGAGGATATTGTCAAGCTGGATATTGTGGCA AGGCCTATGTGCTATTCACGAAGATGCAGAAGTCTCAGGTACAACCTAATGTTGTTACTTGGAATACAATGATATCGGGATATATTCAAAGTGGTGATGA GGACCAAGCCATGGATCTCTTTCATAGGATGGAGAAGGAGGGAGAAATCAAGCGGGATAATGCATCATGGAACTCTCTGATAGCTGGTTTTATGCAAATT AGGAAAAAAGACAAGGCATTAGGCATATTTCGACAAATGCAATCTTTCTGCATTAGTCCCAACCCTGTTACCATTTTGAGCATGTTACCAGCTTGTGCAA GTTTAGTTGCGCTAAAAAAAGTCAAAGAGATCCATGGTTGTGTGTTGCGCAGAAATCTAGTTTCTGTTCTCTCTATTTCAAACTCCCTTATTGACACATA TGCCAAATCAGGGAAAATAGAATATTCAAGAGCAATATTTGATAGAATCCCATCCAAAGATTTCATCACTGTGAACTCAATGATTACTGGGTATGTCTTA CATGGTTGTTCAGACTCTGCGCTTGGTCTCCTTGATCAGATGAGAGAGTTGGGACTTAAACCCAACAGAGGTACTCTTGTGAATATTATCCTTGCGCACA GTCTTGCTGGAATGGTGGATGAGGGGAGGCAAGTATTCTCCAGTATGACAGAAGACTTTCAGATTATACCAGCTTCAGAACATTATGCAGCTATGGTAGA TTTGTATGGTCGTTCTGGCAGGCTCAAAGAAGCAATAGAACTTATTGACAATATGCCAATCAAGCCTCAATCCTCAGTTTGGTATGCCTTACTAACTGCC TGCAGGAATCATGGAAATTCTGACTTGGCAATCCGTGCAAGGGAAAATTTACTTGATTTGGAACCATGGAATTCTTCAATCCACCAGTCAATTTTGCAGT CATATGCCATGCATGGAAAATATGAAGATGCGCCAAAGGTGAAGAAGCTTGAAAAAAGAAACGAAGTACAGAAACCTAAAGGACAGAGCTGGATCGAAGT CAACAACACGGTGCATTCTTTTGTTGCGGGTGATCAGTCTACATCATACTCGGACCTCTTTTCCTGGGTAGAAAGAATATCAATGGAAGCCAAGGTACAT GATCTGCACTGTGGGTGTTGCATCGAGGAGGAGGAGGAGGAAGAGAAGGAAGAAATTGTTGGCATCCATAGTGAAAAGCTTGCGCTTGCTTTTGCCATTA TTCGCTCACCTTCTGCACCTCAAAGTATAAGAATTGTGAAAAACCTTAGAACGTGTGCAGATTGCCATAGGATGGCAAAATACATCTCCGCTAAACATGG ATGTGAAATATATTTGAGTGACTCAAACTTCTTCCACCACTTTAAATCTGGGTGTTGTTCCTGTGGTGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.002G030200.3 pacid=42778870 polypeptide=Potri.002G030200.3.p locus=Potri.002G030200 ID=Potri.002G030200.3.v4.1 annot-version=v4.1 MENLVIIRSISKSPLTTQSKQESQSEFSQKPIKSSISFAKNPLPKFIDSHLDSLCKNGSLNDAVTVLDSVAQQGSKVTPRTYMNLLQSCIDTNSINLGRK FHARISVVQEKSPVIETKLVSMYAKCGYLRDARKVFDEMSERSLFTWSAMIGACCREKRWKEVVELYYMMMKDNVLPDGFLLPKILQAVGNCRDVKTGEL LHSFVVRCGMGSSPRVNNSILAVYSKCGKLSLARRFFESMDERDIVAWNAMMSGYCLKGEVEEAHRLFDAMCEEGIEPGLVTWNILIAGYNQKGQCDVAM NLMKKMVSFGVSPDVVAWTSMISGFAQNNRNGQALDLYKEMILAGVEPNGVTITSALSACASLKVLNTGLGIHSLAVKMSFVNDVLVGNSLIDMYSKCGQ LGAAQLVFDLMSEKDLYTWNSMIGGYCQAGYCGKAYVLFTKMQKSQVQPNVVTWNTMISGYIQSGDEDQAMDLFHRMEKEGEIKRDNASWNSLIAGFMQI RKKDKALGIFRQMQSFCISPNPVTILSMLPACASLVALKKVKEIHGCVLRRNLVSVLSISNSLIDTYAKSGKIEYSRAIFDRIPSKDFITVNSMITGYVL HGCSDSALGLLDQMRELGLKPNRGTLVNIILAHSLAGMVDEGRQVFSSMTEDFQIIPASEHYAAMVDLYGRSGRLKEAIELIDNMPIKPQSSVWYALLTA CRNHGNSDLAIRARENLLDLEPWNSSIHQSILQSYAMHGKYEDAPKVKKLEKRNEVQKPKGQSWIEVNNTVHSFVAGDQSTSYSDLFSWVERISMEAKVH DLHCGCCIEEEEEEEKEEIVGIHSEKLALAFAIIRSPSAPQSIRIVKNLRTCADCHRMAKYISAKHGCEIYLSDSNFFHHFKSGCCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	0	1
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	2.44	0.8860
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	4.00	0.8694
AT1G05030			Major facilitator superfamily ...		Potri.014G060800 [exp]	5.29	0.8580
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.006G249700 [exp]	5.47	0.8443
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Potri.014G137400 [exp]	6.48	0.8717
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	7.34	0.8622
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	9.21	0.8644
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	10.19	0.8548
AT4G36290		CRT1	compromised recognition of TCV...		Potri.005G118400 [exp]	11.26	0.7552
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	11.61	0.8516

Compare expression of checked genes

Potri.002G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.