Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19715 590 / 0 Mannose-binding lectin superfamily protein (.1.2.3) AT1G73040 149 / 8e-42 Mannose-binding lectin superfamily protein (.1) AT1G52040 130 / 2e-32 ATMBP, MBP1 myrosinase-binding protein 1 (.1) AT1G33790 115 / 2e-26 jacalin lectin family protein (.1.2) AT1G60095 108 / 2e-24 Mannose-binding lectin superfamily protein (.1) AT5G49870 107 / 2e-24 Mannose-binding lectin superfamily protein (.1) AT2G25980 105 / 4e-24 Mannose-binding lectin superfamily protein (.1) AT1G60110 101 / 2e-22 Mannose-binding lectin superfamily protein (.1) AT1G52030 97 / 7e-21 MBP1.2, F-ATMBP, MBP2 myrosinase-binding protein 2 (.1.2) AT1G60130 97 / 9e-21 Mannose-binding lectin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232400 [exp] 1071 / 0 AT1G19715 609 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.005G232500 [exp] 317 / 4e-100 AT1G19715 486 / 2e-166 Mannose-binding lectin superfamily protein (.1.2.3) Potri.012G140001 [exp] 153 / 6e-43 AT1G73040 214 / 1e-71 Mannose-binding lectin superfamily protein (.1) Potri.017G010900 [exp] 149 / 6e-39 AT3G16460 135 / 5e-34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2) Potri.010G144900 [exp] 59 / 3e-10 AT1G05760 92 / 5e-24 restricted tev movement 1, Mannose-binding lectin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024290 [exp] 640 / 0 AT1G19715 607 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Lus10024291 [exp] 241 / 2e-70 AT1G19715 438 / 1e-146 Mannose-binding lectin superfamily protein (.1.2.3) Lus10037605 [exp] 141 / 1e-36 AT1G73040 198 / 1e-62 Mannose-binding lectin superfamily protein (.1) Lus10006866 [exp] 139 / 3e-34 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0568 [poplar] [flax] Man_lectin PF01419 [poplar] [flax] Jacalin Jacalin-like lectin domain
Representative CDS sequence Show only first row Show all	>Potri.002G030400.2 pacid=42779417 polypeptide=Potri.002G030400.2.p locus=Potri.002G030400 ID=Potri.002G030400.2.v4.1 annot-version=v4.1 ATGAGTTCCGAGGACGGCGAGAAGAAACCGGTGGCTGTTGGACCATGGGGTGGTCAAGAAGGATTTCTTTGGGATGACGGAGTACACTCCACAGTAAAAC AGCTGGTGATAGCCCATGGAGCAGGTATTGACTCCATCCAGGTAGAGTATGATAGGAAAGGGACTTCAGTATGGTCACAGATCCATGGTGGCAATGGAGG CATGAAAACAACGGTCAAGCTTGACTGCCCAGATGAGTTTCTTACTTCAGTCCATGGATATTATGGCAGTTTGGATGGTTGGGGCCCTGTATTTGTTCGC TCACTCACATTTCGAAGCAACAAGAAAACTTATGGACCATTTGGTGTTGAGCAAGGAACTTATTTTTCATTTCCAATGTCCGGGGGAAAGATTGTTGGGT TCCATGGGAAGAGCGGCTGGTACCTTGATGCAATTGGCATATATTTGAAACCTCTACAGAAACAGAAGACCTCGAAAGCTCTGGTCCAATCAAAAAGTTA CATTAACAACGGGACTGAGAATATTAGCTATTCGATGATGCAGGGTGCAGGAAATGGTTTTGATATATTTGTTGCAGTAAAGCAGAAGGATGATTTTGGC AAATTCTCAACTCAAAATTCTCTAGAGTACAGCAGTGGGGGAACCAATAGAAAGGATGATTTTGGCAGCCCTCTGCCTAGCAAACTCTCAAGACAAATTT CTCGAGAGTTCAGTGACTCAGAAAGCAACAAAAACGATGATTTTGGCAGCCTTCTGCCAAGGATGCTTTCAACACCAATCTCTCGAGAACTCAGCGATGC AGGAACTAACAAGACAATTGCTACCGAAAGGGTGCCCTCAAAAACTGAAGGGGTGATTGTACATGGACCCTGGGGTGGTGTTGGTGGTTCCAAGTTTGAC GATGGAACCTACACTGGAATTAGGCAAATCCATTTATCACGCCATGTTGGAATTGCATCCATAAGAGTTCAATATGATCGTGATGGGCAGGCTACATGGG GAAGCAAACATGGAAAAGGTGGAGGATTTAAATCAGACAAGATAATCTTTGACTATCCATATGAAATACTCACACGGGTGACAGGAACGTACGGACCCTT AATGTACATGGGGCCTAATATTATCAGGTCTCTTACTTTCTACACAAACAAAGGGAAGCACGGGCCATTTGGAGAAGAACAAGGTCCCACCTTCACGAAC AAAATTGATGAAGGGAAAATCATAGGATTCCACGGGAGGGAGGGTTTTCTTCTTGACGCTATTGGGGTACATGTGTTGGAAGGAACAGTAAAACCAGCAA AGCATCACCTTTCTGATGCAATTAAACAAGCTGAAGCAGATGTTGCTGAGATAGATAATTCTCCATGGTCTAATAAACTAGTAGCAGCAAGACCAGGCCA AACCGAGGAGGTTGTTTGTGGGGTGATAAAAGAGCCAGCTCCATGTGGACCGGGTCCTTGGGGTGGAGATGGAGGTCGGCCATGGGATGATGGAGTATTT TCTGGGATTAAGCAGATATTTATTACCAGAGCAGAAGCTATGTGTTCAATACAGATTGAGTATGATCGAAATGGCCAATCTGTTTGGTCTATAAAACATG GAGGCAATGGAGGAACTGCCACACATAGGGTGAAATTGCAGTGCCCCCATGAAGTGCTTGTATGTTTATCAGGATATTATGGTCCCATCGGTAGTGATGG GAATAGTCCTAAAGTTATCAAGTCACTTACTTTTCATACTAGTCGAGGAAATTACGGTCCATTCGGTGAAGAAATTGGAACATTTTTCACTTCAACTACG ACTGAGGGCAAGGTTGTTGGCTTCCATGGAAGAAGCAGCGCATACATGGATGCCATCGGTGTCCATATGCAACACTGGCTAGGAAATCACAGATCCCCGA AGCCTTCTTCTCTGTTTAAGATCTTCAGTTGA
AA sequence Show only first row Show all	>Potri.002G030400.2 pacid=42779417 polypeptide=Potri.002G030400.2.p locus=Potri.002G030400 ID=Potri.002G030400.2.v4.1 annot-version=v4.1 MSSEDGEKKPVAVGPWGGQEGFLWDDGVHSTVKQLVIAHGAGIDSIQVEYDRKGTSVWSQIHGGNGGMKTTVKLDCPDEFLTSVHGYYGSLDGWGPVFVR SLTFRSNKKTYGPFGVEQGTYFSFPMSGGKIVGFHGKSGWYLDAIGIYLKPLQKQKTSKALVQSKSYINNGTENISYSMMQGAGNGFDIFVAVKQKDDFG KFSTQNSLEYSSGGTNRKDDFGSPLPSKLSRQISREFSDSESNKNDDFGSLLPRMLSTPISRELSDAGTNKTIATERVPSKTEGVIVHGPWGGVGGSKFD DGTYTGIRQIHLSRHVGIASIRVQYDRDGQATWGSKHGKGGGFKSDKIIFDYPYEILTRVTGTYGPLMYMGPNIIRSLTFYTNKGKHGPFGEEQGPTFTN KIDEGKIIGFHGREGFLLDAIGVHVLEGTVKPAKHHLSDAIKQAEADVAEIDNSPWSNKLVAARPGQTEEVVCGVIKEPAPCGPGPWGGDGGRPWDDGVF SGIKQIFITRAEAMCSIQIEYDRNGQSVWSIKHGGNGGTATHRVKLQCPHEVLVCLSGYYGPIGSDGNSPKVIKSLTFHTSRGNYGPFGEEIGTFFTSTT TEGKVVGFHGRSSAYMDAIGVHMQHWLGNHRSPKPSSLFKIFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19715			Mannose-binding lectin superfa...		Potri.002G030400 [exp]	0	1
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	2.00	0.8994
AT1G69510			cAMP-regulated phosphoprotein ...		Potri.010G167000 [exp]	3.46	0.8968
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.019G032700 [exp]	4.47	0.8617	MYR1.1
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.008G081800 [exp]	4.89	0.8655	APL.2
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120200 [exp]	5.29	0.8750
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	5.47	0.8791
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Potri.002G014300 [exp]	6.00	0.8710
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	8.06	0.8728	Pt-MYR1.2
AT2G23430		ICK1, KRP1	KIP-RELATED PROTEIN 1, Cyclin-...		Potri.007G042300 [exp]	8.12	0.8010
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.002G107200 [exp]	8.24	0.8389	Pt-ZF14.1

Compare expression of checked genes

Potri.002G030400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.