Plant FIBer expression Database

Potri.002G030701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G45110 150 / 2e-44 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G232200
[exp]
189 / 3e-59 AT1G45110 457 / 7e-162 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024288
[exp]
157 / 4e-47 AT1G45110 451 / 5e-160 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1)
PFAM info
Representative CDS sequence
>Potri.002G030701.1 pacid=42779937 polypeptide=Potri.002G030701.1.p locus=Potri.002G030701 ID=Potri.002G030701.1.v4.1 annot-version=v4.1
ATGGATGAAAATATTCCGGTTACCCCAATTCCGGGACCTTGTGGTGTTGTTTCCGCGCTTTCCGCTTCAGGCTTGGCTACTAATGAGTTTACATTCGTTG
GATTTCTTCCTAGGCATGGTCCATCCAGGAAAGAGAGGCTGATGGCTTCTGCAAATGAAGCAAGAACACAAATATTCTATGTTCTTCCACACAAGTTTTC
TCAGTTTCTCAAAGAATTTTCATCGCTTTTTGGTGTGTCGAGTTTTGGTGGGGCACTCTGGTGGAGGCAAAAGAATCAACAACCTAAGGAGGAGATGACA
CTGCTAATTGAAGGCAGGACAAACTGTTCGGTTGAGACTCCGTCAGAAGTTCAGCTTGAGCATGAATTGAGAGAATTGATCTCCTGTGGGCATACTCTAT
CTACGGTGATGGCCTATTTGATCAGAGATGCAATGCATCAGTGTTGCATAAATTCATTCCCCACACAAATGCTTCTGAAGTTGACAACGTGGAATCCAGT
TAGCTTTGATGTCTTAAAACTTGATGAGCTACTGAATTGTGACTGGTTTTTATTGGGACAAAATATTGTTGCAAGCTAG
AA sequence
>Potri.002G030701.1 pacid=42779937 polypeptide=Potri.002G030701.1.p locus=Potri.002G030701 ID=Potri.002G030701.1.v4.1 annot-version=v4.1
MDENIPVTPIPGPCGVVSALSASGLATNEFTFVGFLPRHGPSRKERLMASANEARTQIFYVLPHKFSQFLKEFSSLFGVSSFGGALWWRQKNQQPKEEMT
LLIEGRTNCSVETPSEVQLEHELRELISCGHTLSTVMAYLIRDAMHQCCINSFPTQMLLKLTTWNPVSFDVLKLDELLNCDWFLLGQNIVAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G45110 Tetrapyrrole (Corrin/Porphyrin... Potri.002G030701
[exp]
0 1
AT1G76110 ARID HMG (high mobility group) box ... Potri.005G246700
[exp]
1.73 0.9629
Potri.018G011950
[exp]
4.89 0.9513
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.009G043200
[exp]
4.89 0.9595
AT1G51550 Kelch repeat-containing F-box ... Potri.010G252200
[exp]
8.94 0.9391
AT3G62550 Adenine nucleotide alpha hydro... Potri.014G122000
[exp]
12.40 0.9333
AT1G76520 Auxin efflux carrier family pr... Potri.001G456300
[exp]
12.48 0.9290
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.001G249800
[exp]
13.41 0.9400
AT2G29630 PY, THIC PYRIMIDINE REQUIRING, thiaminC... Potri.001G249200
[exp]
16.06 0.9364
AT5G65890 ACR1 ACT domain repeat 1 (.1.2) Potri.014G006700
[exp]
16.88 0.8980
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Potri.017G057800
[exp]
20.44 0.9210

Potri.002G030701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.