Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75430 288 / 3e-95 HD BLH11 BEL1-like homeodomain 11 (.1) AT1G19700 254 / 1e-78 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 238 / 1e-72 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G16400 235 / 3e-72 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 223 / 7e-67 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G35940 202 / 6e-58 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT4G36870 197 / 8e-56 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G27220 190 / 2e-55 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT2G23760 183 / 3e-51 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT5G02030 172 / 8e-48 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232000 [exp] 679 / 0 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1) Potri.004G159300 [exp] 254 / 2e-77 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 250 / 4e-76 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 237 / 4e-71 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.016G069700 [exp] 227 / 3e-67 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 224 / 4e-66 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 218 / 2e-63 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 214 / 3e-62 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.003G131300 [exp] 212 / 7e-62 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017481 [exp] 226 / 6e-67 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 226 / 1e-66 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 225 / 2e-66 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 223 / 1e-65 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 222 / 4e-65 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10010633 [exp] 214 / 6e-63 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10013579 [exp] 212 / 1e-62 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10033192 [exp] 213 / 2e-62 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10022599 [exp] 201 / 6e-58 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021498 [exp] 198 / 1e-56 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.002G030900.3 pacid=42779328 polypeptide=Potri.002G030900.3.p locus=Potri.002G030900 ID=Potri.002G030900.3.v4.1 annot-version=v4.1 ATGGTACCTATGGGTTCACAAGACTCACCCCCAAATCCAGCTTCTGGCATGCTACACCAATTCATTATCTCAGACTCCATTGCTAGTCAAAACCAATTTC AAAGTCAGAATTTCAGCGTTTTCGGTCCAGACTTGCGAGGCAGCAACACATTTTCTCAGTCTCATGGTGTATTGCCAAGCATAAAGTCTCTCGAGGAAAG AATGTCTAGGTCAATAGACCTAGTCCAAGTTCCCTCGGCAGTTCAAGAATCTGAGATTAGCCATACCAGACACCTAATGGATCTTCTTGGAGCGGCAAAT GAGACTAATCATCAAGCTCAAAGGTTATCACTGTCTCTTGGTTCTCGGATGCTTGTTCCCCAATTTCAGTACAGGCAGAGATCCTTTAATTCGGATCTCA TGAGTCCTAGTTACTTAGTTCCTAGAGAAGAAGCAAGGGAAGCATATAATCTTGGAGGTGAACAAGTAAACAACGACTATTCTCTCACTGGTAGTGGATT TCCTCAATCATCAACCTCATTAAGTAGACCATCTACTTCTTACGGAACAGAATCTTTTGCGGTTGCTATAGGGAATTCAAGGTATTTAAAGCCTGCTCAG TCCCTGCTAGAAGAAATTGTGCATGTAAGTTGCCAGGCAGTTGAAATTAGCAATGAAAAGTATGTTGGGAAATTATTTCCTTGTGGCCAAAGAGGATCTC TAAGACTTTCTTCTGAATTAAAAGTAGAGCTGTGGGGTATTGGGCTTGTTCAAGCCGAGAAACATGAACTCCAGCTTAAAATTGCAAAGCTTATAGCATT GTTGAAGGAGGTTGAGGGAAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTATCATCATTTGAGGAAATAGCTGGTTTAGGAGCGGCCAAATCC TACACAGCTCTTGCGCTCCAAGCCATGTCCAAGCATTTCTGCAACTTGAGAGATGCTATAGTGTCCCAAATCGATGAGACAAAAAGAAAATTCTCTCGAG ATTTACCAAAAATCAGCACAGAATTGTCACAACTTAGCTTGTTTGATAAAGAGACCAAACATAACCGGATATCTCTTCAACAGCTTGGAATGATGCAAAG CCAAAGGCAAGCATGGAGACCCATCAGAGGGTTGCCAGAGACTTCTGTAACCATCCTTCGCTCTTGGCTTTTTGAACACTTCTTGCACCCGTATCCAAAT GATTATGAGAAACTAATGTTAGCATCGCAGGCAGGCTTGACAAAGAATCAAGTATCAAACTGGTTTATAAATGCTCGAGTCCGGCTATGGAAGCCTATGA TAGAAGAAATGTACAAAGAGGAGTTTGCAGATCACTCAGAGGACTGA
AA sequence Show only first row Show all	>Potri.002G030900.3 pacid=42779328 polypeptide=Potri.002G030900.3.p locus=Potri.002G030900 ID=Potri.002G030900.3.v4.1 annot-version=v4.1 MVPMGSQDSPPNPASGMLHQFIISDSIASQNQFQSQNFSVFGPDLRGSNTFSQSHGVLPSIKSLEERMSRSIDLVQVPSAVQESEISHTRHLMDLLGAAN ETNHQAQRLSLSLGSRMLVPQFQYRQRSFNSDLMSPSYLVPREEAREAYNLGGEQVNNDYSLTGSGFPQSSTSLSRPSTSYGTESFAVAIGNSRYLKPAQ SLLEEIVHVSCQAVEISNEKYVGKLFPCGQRGSLRLSSELKVELWGIGLVQAEKHELQLKIAKLIALLKEVEGRYEKYYHQMEEVVSSFEEIAGLGAAKS YTALALQAMSKHFCNLRDAIVSQIDETKRKFSRDLPKISTELSQLSLFDKETKHNRISLQQLGMMQSQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPN DYEKLMLASQAGLTKNQVSNWFINARVRLWKPMIEEMYKEEFADHSED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	0	1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G141700 [exp]	2.23	0.8620	Pt-CHIA5.2
					Potri.006G037900 [exp]	5.91	0.8153
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	6.32	0.8368	Pt-PSPK3.1
AT3G56200			Transmembrane amino acid trans...		Potri.010G181800 [exp]	7.93	0.8012
AT1G75640			Leucine-rich receptor-like pro...		Potri.002G027400 [exp]	8.12	0.8087
AT2G03630			unknown protein		Potri.008G096300 [exp]	8.36	0.7953
AT4G37180	GARP		Homeodomain-like superfamily p...		Potri.005G134600 [exp]	8.48	0.7961
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Potri.014G068100 [exp]	11.22	0.7194	Pt-RAD51.1
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	16.24	0.7776
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Potri.009G115300 [exp]	18.49	0.7249	Pt-AGB1.1

Compare expression of checked genes

Potri.002G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.