Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57960 737 / 0 GTP-binding protein, HflX (.1) AT3G49725 152 / 2e-39 GTP-binding protein, HflX (.1) AT5G18570 55 / 1e-07 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007700 [exp] 162 / 3e-43 AT3G49725 513 / 3e-176 GTP-binding protein, HflX (.1) Potri.010G022400 [exp] 50 / 3e-06 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.015G140400 [exp] 42 / 0.0004 AT5G52210 343 / 1e-121 GTP-binding protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024287 [exp] 629 / 0 AT5G57960 634 / 0.0 GTP-binding protein, HflX (.1) Lus10018403 [exp] 61 / 9e-10 AT3G49725 301 / 1e-97 GTP-binding protein, HflX (.1) Lus10034166 [exp] 50 / 3e-06 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 46 / 7e-05 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 45 / 0.0002 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0023 [poplar] [flax] PF13167 [poplar] [flax] GTP-bdg_N GTP-binding GTPase N-terminal CL0023 [poplar] [flax] PF16360 [poplar] [flax] GTP-bdg_M GTP-binding GTPase Middle Region
Representative CDS sequence Show only first row Show all	>Potri.002G031100.8 pacid=42778218 polypeptide=Potri.002G031100.8.p locus=Potri.002G031100 ID=Potri.002G031100.8.v4.1 annot-version=v4.1 ATGATTGTATCCCACTGCTCTCTAACACGACCCTGGCATCCATCCACTCACGAACCCTATTTCCCTAACCTTAAAAAACCAAAATTCCCTCTAATTTTTA CTTCTAGCATAACCTATTCCTTAAAACTCACGGCCCATGTCCTCCCGCAAGGAACTGAAGTAGTGTCCCCTGACAACGTTCTTGTACAAAACCCAGTAAT TGAGACCATAGAAGCAAAAGAAGAAGAAGTCCATGGAGTTTTCAATGGAGTGGCAAGCACCAAATCAGAAGATAAAACCCCAGTGAAGAAGAAGAAGAAA GAAGAAGAGGACAGCTTTGAAAATAGGTTCCAGCTTCGAAATGGAAGAGAGGTTTACGAGGAGAAAGCTTATCTGGTTGGAGTTGAGCGAAAAGGCAATA CGGTTGATGCTTTTGGGATAGAGGAGTCCCTTGAAGAATTGGGACAGCTTGCTGATACTGCTGGAGTTGCAGTTGTTGGTTCTACTTGTCAGAAACTAGC TTCTCCGAACCCGAGGACTTACATTGGATCAGGCAAGGTGGCGGAAATTAAGAGTGCGATACATGGACTGGGTGCTGAGACAGTAATATTTGACGATGAA CTTTCTCCGGGACAACTGCGTAACTTGGAAAAGATTTTTGGTGGAGATGTTAGAGTTTGTGACCGCACTGCCCTTATCCTGGATATATTCAACCAGCGAG CAGCGACACATGAAGCATCTTTGCAGGTTGCACTGGCTCAAATGGAATACCAGTTACCTCGACTAACTAGAATGTGGTCTCACCTTGAGCGCCAAGCTGG AGGCAGGGTGAAGGGTATGGGAGAGAAACAAATTGAAGTAGATAAGCGTATCCTCCGTACTCAAATTGGTGTTCTTAAAAAAGAGCTAGAATCTGTTAGA AAACATAGAAAGCAGTACAGGAATAGGCGTACCTCTGTTCCTGTCCCTGTAGTATCTTTGGTTGGTTACACAAATGCCGGAAAGAGTACACTTTTGAATC AATTAACTGGAGCAGATGTTCTTGCCGAGGATCGGCTATTTGCGACACTTGATCCTACTACAAGAAGGGTTCAGATAAAGAACGGGAACGAGTTCCTTCT GACAGATACTGTTGGTTTCATCCAAAAGCTCCCAACTACTCTTGTTGCTGCTTTCAGGGCAACATTGGAGGAGATATCAGAGTCATCGCTATTGGTACAT GTGGTTGACATCAGCCATCCACTGGTGGAGCAACAGGTACATGCAGTGGACGAAGTTTTGTCGGAACTGGATGTATCATCAATTCCAAGGCTGATGGTTT GGAACAAGGTTGACAGGGTCAGTGATCCTAAAAAACTAAAGTTGGAAGCAGAGAGAAAACAAGATGTTGTTTGTGTGTCTGCTTTGAATGGCGATGGGTT AGAAGAATTCTGCAATGCAGTTCAGGAAAAAATGAAGGATTCTATGGTATGGGTAGAAGCTTTGGTTCCTTTTGACAAAGGGGAGCTTCTCAGTACCATA CATCAAGTTGGAATGGTAGAGAGAACAGAATACACAGAAAGTGGGACATTGATCAAGGCGCACGTCCCGCTTCGTTTTGCAAGGTTGCTAACTCCTATGA GACAGTTGTGTGCATCGTAA
AA sequence Show only first row Show all	>Potri.002G031100.8 pacid=42778218 polypeptide=Potri.002G031100.8.p locus=Potri.002G031100 ID=Potri.002G031100.8.v4.1 annot-version=v4.1 MIVSHCSLTRPWHPSTHEPYFPNLKKPKFPLIFTSSITYSLKLTAHVLPQGTEVVSPDNVLVQNPVIETIEAKEEEVHGVFNGVASTKSEDKTPVKKKKK EEEDSFENRFQLRNGREVYEEKAYLVGVERKGNTVDAFGIEESLEELGQLADTAGVAVVGSTCQKLASPNPRTYIGSGKVAEIKSAIHGLGAETVIFDDE LSPGQLRNLEKIFGGDVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTRMWSHLERQAGGRVKGMGEKQIEVDKRILRTQIGVLKKELESVR KHRKQYRNRRTSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDRLFATLDPTTRRVQIKNGNEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVH VVDISHPLVEQQVHAVDEVLSELDVSSIPRLMVWNKVDRVSDPKKLKLEAERKQDVVCVSALNGDGLEEFCNAVQEKMKDSMVWVEALVPFDKGELLSTI HQVGMVERTEYTESGTLIKAHVPLRFARLLTPMRQLCAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57960			GTP-binding protein, HflX (.1)		Potri.002G031100 [exp]	0	1
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	2.82	0.9754
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	2.82	0.9778
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	4.89	0.9742
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	6.00	0.9713
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	7.41	0.9706
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	7.74	0.9737
AT5G03900			Iron-sulphur cluster biosynthe...		Potri.004G090400 [exp]	8.36	0.9710
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	8.94	0.9719
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.002G063400 [exp]	9.16	0.9723
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	9.16	0.9727	RPOD1.1

Compare expression of checked genes

Potri.002G031100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.