Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) AT4G36430 412 / 1e-144 Peroxidase superfamily protein (.1) AT2G18150 405 / 6e-142 Peroxidase superfamily protein (.1) AT5G66390 403 / 3e-141 Peroxidase superfamily protein (.1) AT2G18140 376 / 1e-130 Peroxidase superfamily protein (.1) AT3G50990 370 / 6e-128 Peroxidase superfamily protein (.1) AT5G06720 327 / 3e-111 ATPA2 peroxidase 2 (.1) AT2G35380 325 / 2e-110 Peroxidase superfamily protein (.1.2) AT5G06730 320 / 5e-108 Peroxidase superfamily protein (.1) AT4G16270 317 / 1e-106 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019300 [exp] 416 / 2e-146 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 414 / 1e-145 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 332 / 3e-113 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.008G103200 [exp] 327 / 3e-111 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 321 / 3e-109 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 318 / 6e-108 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 315 / 1e-106 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 311 / 3e-105 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 310 / 6e-105 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010634 [exp] 474 / 8e-169 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10041784 [exp] 409 / 1e-143 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10034207 [exp] 323 / 7e-110 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10004163 [exp] 311 / 4e-105 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10029094 [exp] 309 / 3e-104 AT1G68850 439 / 1e-155 Peroxidase superfamily protein (.1) Lus10006534 [exp] 308 / 5e-104 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10032786 [exp] 305 / 6e-103 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10013065 [exp] 305 / 1e-102 AT1G68850 431 / 2e-152 Peroxidase superfamily protein (.1) Lus10009935 [exp] 303 / 4e-102 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10003573 [exp] 301 / 1e-101 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.002G031200.1 pacid=42778009 polypeptide=Potri.002G031200.1.p locus=Potri.002G031200 ID=Potri.002G031200.1.v4.1 annot-version=v4.1 ATGGCTTTCTCTAAAGCGAGTTTTAGTTTCATTGTCATGATTGTTCTCCTCTCATCAACAACGAGCCTAGCTCATCCTGGTTTGGGCTGGGGTGGAAAGG GTGGTCCTTTTGGTGGTGGCTCCTCTGGTCTGTTCCCTGGATTCTATCAGTATTCATGTCCTCAAGCTAATGACATTGTCATGTCAGTGTTAAGAAAAGC TATTGCAAAGGACTCCAGGATGCCTGCCTCTTTGCTAAGGCTTCATTTTCATGATTGCTTTGTGCAGGGTTGTGATGCATCGGTATTGTTGGACGATAGT GCAAAGATAGTGAGTGAGAAGAATTCTGGACCAAACAAGAATTCCCTCAGAGGATTTGAAGTGGTTGATGAAATCAAGGCTAAGTTGGAAGAAGCATGCC CTCAAACTGTCTCCTGCGCAGACATTCTCGCCTTGGCAGCTCGTGGCTCAACTGTGCTAAGCGGCGGGCCTAATTGGGAACTCCCATTAGGAAGAAGGGA CTCGAAGACTGCGAGTCTGAGTGGCTCAAACAACAACATCCCTGCACCCAACTCCACCATTCAAAACCTCATATCACTTTTCAAGCGTCAAGGCCTTAAT GATATTGACCTTGTTGCTCTCTCAGGAGGGCATACAATTGGGGTAGCAAGGTGTGTGACCTTCAAGCAGAGGCTATACAACCAAAATGGAAACAACCAGC CAGATCATACTATAGAGAAAAACTATTTCTTAGATTTGAAGTCAGTGTGTCCAAAATCTGGAGGAGACAATAACATTTCTCCCTTGGACTTGGCCTCTCC AGCAAAATTTGACAACACTTACTTCAAGCTCTTACTTTGGGGCAAAGGGCTTCTCACTTCTGATGAAGTGCTTTATACAGGTAAAGTTGGCAAGACAATT CAGTTGGTTAAGAGATATGCTGAGGATGAGGGCCGGTTCTTTGAGCATTTTGCCAAGTCTATGGTTAAGATGGGAAGCATTAGTCCTCTTACTGGTTTTA ATGGTGAAGTTAGGAAGAACTGTCGCCTTGTTAATTAA
AA sequence Show only first row Show all	>Potri.002G031200.1 pacid=42778009 polypeptide=Potri.002G031200.1.p locus=Potri.002G031200 ID=Potri.002G031200.1.v4.1 annot-version=v4.1 MAFSKASFSFIVMIVLLSSTTSLAHPGLGWGGKGGPFGGGSSGLFPGFYQYSCPQANDIVMSVLRKAIAKDSRMPASLLRLHFHDCFVQGCDASVLLDDS AKIVSEKNSGPNKNSLRGFEVVDEIKAKLEEACPQTVSCADILALAARGSTVLSGGPNWELPLGRRDSKTASLSGSNNNIPAPNSTIQNLISLFKRQGLN DIDLVALSGGHTIGVARCVTFKQRLYNQNGNNQPDHTIEKNYFLDLKSVCPKSGGDNNISPLDLASPAKFDNTYFKLLLWGKGLLTSDEVLYTGKVGKTI QLVKRYAEDEGRFFEHFAKSMVKMGSISPLTGFNGEVRKNCRLVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44970			Peroxidase superfamily protein...		Potri.002G031200 [exp]	0	1
AT5G25050			Major facilitator superfamily ...		Potri.006G266000 [exp]	1.00	0.8481
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061600 [exp]	3.00	0.8053
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	7.21	0.7881
AT4G25845			unknown protein		Potri.006G167300 [exp]	15.32	0.8337
AT2G44500			O-fucosyltransferase family pr...		Potri.009G022500 [exp]	17.23	0.7870
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123200 [exp]	18.33	0.7883
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.002G022700 [exp]	24.33	0.7091
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	26.98	0.7618
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Potri.015G025900 [exp]	27.65	0.8384
AT2G33580			Protein kinase superfamily pro...		Potri.005G128401 [exp]	28.89	0.7376

Compare expression of checked genes

Potri.002G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.