Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75420 644 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G19710 618 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G52420 157 / 1e-41 UDP-Glycosyltransferase superfamily protein (.1) AT3G15940 114 / 8e-27 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G78800 53 / 3e-07 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118800 [exp] 643 / 0 AT1G75420 654 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G179000 [exp] 116 / 2e-27 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.011G109000 [exp] 43 / 0.0003 AT1G78800 663 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024281 [exp] 684 / 0 AT1G75420 689 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10041786 [exp] 612 / 0 AT1G75420 647 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10028338 [exp] 605 / 0 AT1G75420 642 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011469 [exp] 161 / 7e-43 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037523 [exp] 156 / 9e-41 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037008 [exp] 50 / 3e-06 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10015797 [exp] 47 / 2e-05 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF16994 [poplar] [flax] Glyco_trans_4_5 Glycosyl-transferase family 4
Representative CDS sequence Show only first row Show all	>Potri.002G031300.1 pacid=42777012 polypeptide=Potri.002G031300.1.p locus=Potri.002G031300 ID=Potri.002G031300.1.v4.1 annot-version=v4.1 ATGGGAAAACAAGCAACCGCGTGGAATACAATACAGAAGAAGAGATGGACACTGATGATTCTGGCTCTGTTCACTCTCTTAACACTGACATTCTTCTTCT TCACGAGATCCGCATTCAATTCCTGTAACTCTACTGACCACTTCCAAGCTCAGATTCAATCAGCTTCGCAAACATCAAGTTCAGGACCGAATCCTCTTGG TTTCATGAAATCAAAGCTCGTTCTCCTTGTCTCTCACGAGCTCTCTCTTTCTGGCGGACCTCTGTTGTTGATGGAGCTTGCGTTTTTATTAAGAGGAGTT GGAGCCGAAGTGGTTTGGATCACCAATCAGAAACCGGCCCAAGCTGATGATGGTGTTATTTACAGCTTAGAGCGTAAAATGTTGGACCGCGGAGTGCAGG TTTTTTCTGCAAAAAGTCAGAAAGCGATAGATACAGCGATGAAAGCTGACTTGGTTGTTTTAAATACTGCTGTTGCTGGGAAGTGGCTGGAAGGTGTTTT GAAGGAGAATGTGAAGCAAGTTCTTCCGAAGGTTCTGTGGTGGATTCATGAAATGAGAGGGCATTACTTCAAATTAGAGTATGTTAAGCACCTCCCTTTT GTTGCAGGTGCTATGATTGATTCGCATACGACAGCAGAATACTGGAAGAACAGGACTCGAGAGCGATTAGGGATTAAAATGCCTGAAACATATGTTGTCC ACCTTGGAAATAGCAAGGACCTTATGGAAGTGGCTGAAGATAGTGTAGCCAAGAGGGTGCTTCGTGAGCATGTTCGAGAGTCTCTTGGGGTGAGGGATGA TGATCTACTCTTTGCCATCATAAATAGTGTTTCGCGTGGGAAAGGGCAGGACCTCTTTCTTCATTCTTTCTATGAGAGCCTCCATCTGATCCAAGAGAAG AAGCAGCAGGTGCCATCAGTGCATGCAGTAATTGTGGGAAGTGACATGAATGCTCAGACGAAGTTTGAAACAGAGCTGCGTAATTTTGTTTTAGAGAAGA AGATTCAAGACCGTGTTCACTTTGTAAATAAAACCCTGACTGTTGCTCCATATTTGGCTGCGATTGATGTTCTTGTGCAGAACTCTCAGGCTAGAGGAGA GTGCTTTGGGCGGATTACCATTGAAGCAATGGCCTTTCAGCTGCCTGTGTTGGGCACTGCAGCTGGAGGCACTATGGAGATTGTCGTGAACGGCACCACA GGCTTGTTGCATCCTATTGGAAAAGAAGGCGTGATTCCTCTTGCAAATAACATTTTGAAGTTAGCCACACATGTTGAAAGAAGATTGACAATGGGAAAGA AGGGATATGAGAGGGTGAAAGACGTATTCTTGGAACACCATATGTCACAGAGAATATCTTTTGTGCTAAAAAAGGTGTTGCAGAAGGCCCAAGTCCTAGG CTAG
AA sequence Show only first row Show all	>Potri.002G031300.1 pacid=42777012 polypeptide=Potri.002G031300.1.p locus=Potri.002G031300 ID=Potri.002G031300.1.v4.1 annot-version=v4.1 MGKQATAWNTIQKKRWTLMILALFTLLTLTFFFFTRSAFNSCNSTDHFQAQIQSASQTSSSGPNPLGFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV GAEVVWITNQKPAQADDGVIYSLERKMLDRGVQVFSAKSQKAIDTAMKADLVVLNTAVAGKWLEGVLKENVKQVLPKVLWWIHEMRGHYFKLEYVKHLPF VAGAMIDSHTTAEYWKNRTRERLGIKMPETYVVHLGNSKDLMEVAEDSVAKRVLREHVRESLGVRDDDLLFAIINSVSRGKGQDLFLHSFYESLHLIQEK KQQVPSVHAVIVGSDMNAQTKFETELRNFVLEKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTT GLLHPIGKEGVIPLANNILKLATHVERRLTMGKKGYERVKDVFLEHHMSQRISFVLKKVLQKAQVLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	0	1
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	1.73	0.9592
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	3.74	0.9566
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	4.24	0.9385
AT5G11960			Protein of unknown function (D...		Potri.018G060500 [exp]	4.24	0.9553
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	5.19	0.9503
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	5.47	0.9481
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.001G147900 [exp]	5.65	0.9517
AT4G24840			unknown protein		Potri.015G094000 [exp]	6.48	0.9521
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	6.92	0.9522
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	8.06	0.9475

Compare expression of checked genes

Potri.002G031300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.