Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19690 385 / 3e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024280 [exp] 414 / 1e-144 AT1G19690 331 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003838 [exp] 122 / 4e-33 AT1G19690 96 / 6e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G031500.1 pacid=42779402 polypeptide=Potri.002G031500.1.p locus=Potri.002G031500 ID=Potri.002G031500.1.v4.1 annot-version=v4.1 ATGCCCAGCTTCCCCGCGACAAAAACTGACCCGGCACTTCAAATTACACCCGATATGTCACAATCCGCTATGGAGATATACCAGGTAAAAATACCGGCAC GCTTTCCTCTACAAGCCGGTTGTTTTCCTTCAAACTCAAAAAAAACGTCAACGTTTTTGCCTCGTGTAGCTGCTTTTTCAACCAGTTCACATTCCCTAAC GGATAAATCGGAATCCGAATCTCAGAATCGGATGTTCATTCTCGGCATGGGATTTGTGTGTCAATTCTTTGCACAGTCCCTTCAAAAAGAAGGCTGGGTA GTTACTGGAACTTGCACGAGCAAAACGAAGAAGAAACATCTTGAGGAGAAGGGATTTCATGTTCACCTTCTTGATGCAAATCAGCCAGAATTGAGCACTC TAAATGCTTTGAAATGTTACACGCACCTCCTGGTCTCAATCCCTCCTGTTGGGTGCGCGGGTGATCCGATGCTTCAGCATGAAGAACTTTTAAGAAGTAC GCTGTTGGACGGAAATCTTCAATGGCTTTGTTACTTGTCATCTACCAGTGTATATGGTCATTGTGATGGTGCTTGGGTGGATGAGGATTATCCAACCAGC CCTACAAGTGAGCTAGCTAAATTGAGGTTAGATGCTGAGGAAGGATGGCTAAATCTGGGCCAAAGCCTGGGGTTTTCCACTCAAGTATTTCGTCTTGGAG GTATCTATGGTCCTGGAAGAAGCGCTGTCGATACAATAATTAAGCAAGAGCCACAGTCAGAAGGTCAGAAGATGAGAAAATCGAGGCAATACACTTCCAG AGTTCATGTTGAGGACATTTGTCAAGCACTGAAGGCTAGTATTTACACGCCATCCTCCAGGGGAATTTACAATATTGTGGATGATGACCCAGCTCCTCGT GAAGAGGTGTTTACATATGCAGAGGACTTGATCAAGAAGAAGTGGCCAGGCCACACTAAATGGAGCTCTAATTCTGCTAGTGCTGCATCACCTACCAAGA AGGATAATTCAAGAGGAGATAAACGGGTTTCCAATATGCGTATGAAGAGAGAACTAGGAGTGAGGCTTCTCCATCCAAGTTATAGATCAGGATTGCTAAG TATTATTGATCAAATGGAAAACCCATTTCACTGTAGTCCATGA
AA sequence Show only first row Show all	>Potri.002G031500.1 pacid=42779402 polypeptide=Potri.002G031500.1.p locus=Potri.002G031500 ID=Potri.002G031500.1.v4.1 annot-version=v4.1 MPSFPATKTDPALQITPDMSQSAMEIYQVKIPARFPLQAGCFPSNSKKTSTFLPRVAAFSTSSHSLTDKSESESQNRMFILGMGFVCQFFAQSLQKEGWV VTGTCTSKTKKKHLEEKGFHVHLLDANQPELSTLNALKCYTHLLVSIPPVGCAGDPMLQHEELLRSTLLDGNLQWLCYLSSTSVYGHCDGAWVDEDYPTS PTSELAKLRLDAEEGWLNLGQSLGFSTQVFRLGGIYGPGRSAVDTIIKQEPQSEGQKMRKSRQYTSRVHVEDICQALKASIYTPSSRGIYNIVDDDPAPR EEVFTYAEDLIKKKWPGHTKWSSNSASAASPTKKDNSRGDKRVSNMRMKRELGVRLLHPSYRSGLLSIIDQMENPFHCSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19690			NAD(P)-binding Rossmann-fold s...		Potri.002G031500 [exp]	0	1
AT1G18490			Protein of unknown function (D...		Potri.012G057400 [exp]	4.89	0.6881
AT5G57060			unknown protein		Potri.003G044400 [exp]	10.19	0.7554
AT1G02740			MRG family protein (.1)		Potri.014G022400 [exp]	15.39	0.7265
AT4G36720		HVA22K	HVA22-like protein K (.1)		Potri.009G113400 [exp]	18.97	0.6739
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Potri.002G175000 [exp]	19.89	0.7041	Pt-RSP31.2
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.016G094300 [exp]	24.97	0.5915
AT5G16160			unknown protein		Potri.017G116500 [exp]	25.74	0.6665
AT5G11030		ALF4	aberrant lateral root formatio...		Potri.006G259600 [exp]	28.91	0.5674
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.014G153800 [exp]	30.98	0.6617
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.010G121500 [exp]	40.98	0.6140

Compare expression of checked genes

Potri.002G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.