Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04940 363 / 1e-127 AtTic20-I, atTIC20, TIC20 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) AT1G04945 324 / 3e-107 HIT-type Zinc finger family protein (.1.2.3) AT4G03320 175 / 1e-53 AtTic20-IV, TIC20-IV translocon at the inner envelope membrane of chloroplasts 20-IV (.1) AT2G47840 45 / 1e-05 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231400 [exp] 474 / 2e-171 AT1G04940 360 / 2e-126 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Potri.019G108800 [exp] 194 / 1e-60 AT4G03320 283 / 2e-95 translocon at the inner envelope membrane of chloroplasts 20-IV (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010636 [exp] 351 / 5e-123 AT1G04940 338 / 9e-118 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Lus10033195 [exp] 349 / 4e-122 AT1G04940 341 / 7e-119 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Lus10039783 [exp] 171 / 8e-52 AT4G03320 263 / 1e-87 translocon at the inner envelope membrane of chloroplasts 20-IV (.1) Lus10026842 [exp] 41 / 0.0004 AT2G47840 219 / 1e-72 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16166 [poplar] [flax] TIC20 Chloroplast import apparatus Tic20-like
Representative CDS sequence Show only first row Show all	>Potri.002G031800.1 pacid=42779722 polypeptide=Potri.002G031800.1.p locus=Potri.002G031800 ID=Potri.002G031800.1.v4.1 annot-version=v4.1 ATGATTCTAAATGGGTGTGCCATGCCTTCCGGGTCTGCTTTTAGTAGCACCAGAACATGTAAAACAATGCCTGGTATCATGGTTTCTGACCATGTTCCTT ATACAACTGCAAGGGCTGCGTTGTTGAGCAGCAGGGCTTCATTGGAACGACATTTGGAGTCTAAATCCTGGTCATCTAGAGGTTTCCTTTCCTTGCACCT GTCGGCTGCATCAACACCACTCTTAAGTGGAGATTATTGTGGATTTTCACACTATATTCCCACATTTCCTCGGCAGCGTAGATCCTATTCATGTCCTCGA GCATCAAAAGATGTCCCATACAGTTTTCGCTTTCCTCCAATGACCAAGAAGCCAAGATGGTGGTGGAGGACTTTAGCATGCCTGCCCTATTTGATGCCTC TTCATGAAACATGGATGTATGCTGAGACGGCATATCATCTACATCCCTTCCTTGAAGACTTTGAATTCTTGACCTACCCATTCCTTGGGGCAATTGGGAG GTTACCAAGCTGGTTCTTGATGGCATATTTCTTTGTTGCATATCTTGGAGTAGTAAGAAGAAAGGAGTGGCCTCACTTTTTCAGATTTCATGTGGTAATG GGCATGCTATTGGAGATTGCTCTCCAGGTGATAGGTACTGTGAGCCGATGGATGCCTCTTGCTGTTTATTGGGGTAAATTGGGCATGCACTTCTGGACAG CTGTGGCATTTGCTTATCTTTTTACAGTCCTAGAGTGCATACGGTGTGCTCTTGCTGGCATGTACGCTGATGTCCCTTTTGCTTGTGATGCGGCATACAT TCAAATCCCATACGATTAA
AA sequence Show only first row Show all	>Potri.002G031800.1 pacid=42779722 polypeptide=Potri.002G031800.1.p locus=Potri.002G031800 ID=Potri.002G031800.1.v4.1 annot-version=v4.1 MILNGCAMPSGSAFSSTRTCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSSRGFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPR ASKDVPYSFRFPPMTKKPRWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGVVRRKEWPHFFRFHVVM GMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTVLECIRCALAGMYADVPFACDAAYIQIPYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Potri.002G031800 [exp]	0	1
AT1G42960			unknown protein		Potri.005G254200 [exp]	2.44	0.9306
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.006G040800 [exp]	4.00	0.9203
AT3G23760			unknown protein		Potri.001G068800 [exp]	5.00	0.9046
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.011G150700 [exp]	5.47	0.8938
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Potri.017G125100 [exp]	10.09	0.9128
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.002G220500 [exp]	10.67	0.8576
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.012G040900 [exp]	12.64	0.9009
AT2G25320			TRAF-like family protein (.1)		Potri.006G065300 [exp]	13.30	0.8568
AT3G07910			unknown protein		Potri.009G071900 [exp]	16.76	0.7930
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	18.97	0.9055	Pt-GSA1.1

Compare expression of checked genes

Potri.002G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.