Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MPK1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59580 624 / 0 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT1G10210 624 / 0 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 601 / 0 ATMPK7 MAP kinase 7 (.1) AT4G36450 555 / 0 ATMPK14 mitogen-activated protein kinase 14 (.1) AT1G07880 391 / 1e-135 ATMPK13 Protein kinase superfamily protein (.1.2) AT3G45640 390 / 4e-135 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT4G01370 381 / 2e-131 ATMPK4 MAP kinase 4 (.1) AT2G43790 380 / 1e-130 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT4G11330 379 / 2e-130 ATMPK5 MAP kinase 5 (.1) AT1G01560 357 / 4e-122 ATMPK11 MAP kinase 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231100 [exp] 671 / 0 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.005G119500 [exp] 590 / 0 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.007G020100 [exp] 578 / 0 AT2G18170 654 / 0.0 MAP kinase 7 (.1) Potri.009G066100 [exp] 395 / 6e-137 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.017G010200 [exp] 390 / 1e-134 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.007G139800 [exp] 390 / 2e-134 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.001G271700 [exp] 388 / 4e-134 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.003G131800 [exp] 386 / 4e-133 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 382 / 5e-132 AT4G01370 684 / 0.0 MAP kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033197 [exp] 629 / 0 AT1G10210 660 / 0.0 mitogen-activated protein kinase 1 (.1.2) Lus10010637 [exp] 625 / 0 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10025986 [exp] 543 / 0 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10014283 [exp] 539 / 0 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10036136 [exp] 394 / 2e-136 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10024668 [exp] 392 / 1e-135 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10018127 [exp] 391 / 4e-135 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10017518 [exp] 389 / 3e-134 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10008339 [exp] 387 / 4e-133 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10028765 [exp] 386 / 4e-133 AT4G01370 630 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.002G032100.3 pacid=42776845 polypeptide=Potri.002G032100.3.p locus=Potri.002G032100 ID=Potri.002G032100.3.v4.1 annot-version=v4.1 ATGAATGTATTGCAGGGAATGGCAACACCAGTTGAGCCACCAAATGGGGTTAGGAATCAGGGGAAGCATTACTATTCAATGTGGCAAACTTTGTTTGAGA TCGATACAAAGTATGTGCCGATCAAGCCTATAGGTCGAGGGGCTTATGGTATTGTGTGCTCTTCTGTGAATAGAGAAACCACTGAGAAAGTTGCGATTAA AAAGATACACAACGCTTTTGAGAACCGTGTTGATGCGCTGAGAACTTTAAGGGAATTGAAGCTTCTTCGGCATCTTCTACATGAGAATGTGATTGGTTTG AAAGATGTGATGATGCCCATACAAAGGAGAAGCTTTAAGGATGTTTATTTGGTTTATGAACTCATGGATACAGATCTGCATCAAATTATCAAGTCTTCTC AAGCACTTACTAATGAGCACTGCCAGTACTTCCTATTTCAGTTGCTTCGTGGTCTGAAATATCTTCACTCAGCAAATATTCTGCATCGTGACTTAAAGCC TGGGAACCTTCTCATTAATGCGAACTGTGAGCTAAAGATCTGTGATTTTGGGCTGGCACGTACTAGCAATGGCAAGAACCAATTCATGACTGAGTATGTT GTCACTCGATGGTATCGAGCTCCAGAGCTCCTTCTCTGCTGTGATAACTATGGGACATCAATTGATGTCTGGTCTGTAGGATGCATCTTTGCAGAGCTTC TTGGTCGGAAGCCTATCTTTCCTGGCACAGAATGTCTCAATCAGCTTAAACTTATCATCAGCATCCTTGGAAGTCAGAGGGAGGAGGATCTTGAATTTAT TGATAACCCGAAGGCAAAGAAATATATCAAGTCACTTCCTTATTCTCCTGGGACTCCCCTTTCCCGCCTTTATCCTAATGCACATCCTTTGGCAATTGAT CTGCTACAAAAAATGCTTGTTTTTGACCCATCAAAAAGGATTACTGTTACCGGAGCACTGGAACACCCTTACATGTCTCTGCTATATGATCCCAGCAGCA ACCCTCCAGCACAGGTCCCAATTGATCTTGACATAGATGAGGAATTAGGGGAAGAGATGATACGAGAGATGATGTGGAAGGAGATGCTTCATTACCATCC TGAAGCCGCGGCAGTCAATGGCGAGGTGCGCTCCTAA
AA sequence Show only first row Show all	>Potri.002G032100.3 pacid=42776845 polypeptide=Potri.002G032100.3.p locus=Potri.002G032100 ID=Potri.002G032100.3.v4.1 annot-version=v4.1 MNVLQGMATPVEPPNGVRNQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETTEKVAIKKIHNAFENRVDALRTLRELKLLRHLLHENVIGL KDVMMPIQRRSFKDVYLVYELMDTDLHQIIKSSQALTNEHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCELKICDFGLARTSNGKNQFMTEYV VTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIISILGSQREEDLEFIDNPKAKKYIKSLPYSPGTPLSRLYPNAHPLAID LLQKMLVFDPSKRITVTGALEHPYMSLLYDPSSNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEAAAVNGEVRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.002G032100 [exp]	0	1	Pt-MPK1.2
AT1G34360			translation initiation factor ...		Potri.009G137000 [exp]	4.47	0.7207
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	7.54	0.7706
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Potri.012G022700 [exp]	16.24	0.7276
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	19.94	0.7542
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Potri.001G016200 [exp]	23.21	0.6610
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G290600 [exp]	25.74	0.7363
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.002G068600 [exp]	30.06	0.7239	GT2.3
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128700 [exp]	31.63	0.7240
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	43.11	0.7198	Pt-AAT.3
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014450 [exp]	43.88	0.7110

Compare expression of checked genes

Potri.002G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.