Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45190 331 / 4e-108 Cyclin family protein (.1.2) AT4G19600 327 / 4e-107 CYCT1;4 Cyclin family protein (.1) AT1G27630 313 / 1e-104 CYCT1;3 cyclin T 1;3 (.1) AT4G19560 241 / 7e-75 CYCT1;2 Cyclin family protein (.1) AT1G35440 190 / 9e-58 CYCT1;1 cyclin T1;1 (.1) AT2G26430 145 / 5e-39 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT5G48630 52 / 2e-07 Cyclin family protein (.1.2) AT5G48640 46 / 2e-05 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148800 [exp] 339 / 2e-111 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 327 / 2e-106 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 325 / 1e-105 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 318 / 4e-103 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.008G150500 [exp] 182 / 3e-53 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.010G090400 [exp] 148 / 7e-41 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.008G043600 [exp] 147 / 1e-39 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.014G194900 [exp] 60 / 6e-10 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.002G246800 [exp] 51 / 6e-07 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040640 [exp] 316 / 1e-102 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10036192 [exp] 215 / 1e-64 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10038329 [exp] 211 / 5e-63 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10021927 [exp] 196 / 3e-58 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10041213 [exp] 147 / 3e-40 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10041418 [exp] 118 / 2e-28 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10036509 [exp] 87 / 1e-18 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3) Lus10036191 [exp] 69 / 1e-14 AT5G45190 109 / 1e-29 Cyclin family protein (.1.2) Lus10003151 [exp] 64 / 3e-11 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 64 / 3e-11 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G032300.1 pacid=42777365 polypeptide=Potri.002G032300.1.p locus=Potri.002G032300 ID=Potri.002G032300.1.v4.1 annot-version=v4.1 ATGGCTAGGATTGCAACTAGCATGCACTTGCCGAAGGAGCCTCAGTATCATACACGCAAGTGGTACTTCAGTAGACAAGAAATTGAAGATTTTTCCCCTT CTAGAAGGGATGGTATTGACGTTGAGAAGGAGTCTCAATTACGGAAATTGTACTGTTCATTTATTAAAGAGCTCGGCGTGAAGCTTAAAGTGCCCCAGGT GACAATAGCATGTGCATTGATATTGTGCCACCGGTTTTACATGCGTCAATCTCATGCAAAGAATGATTGGAAGACAATGGCATCTGCAAGCATGTTTCTT GCTTGCAAACTGGAGGAAACTCCGCGCTTGCTGAGGGATGTTGTTGTTGTGGCTTATGAGCTGATGCACAAAAGGGATCCTTCTGCCTCACATAGAATCA GGCAGATAGGATTTTGCAGTAGTCAGAAGGAATTGCTTGTAACTGGAGAGAGGCTTTTATTGGCAACAATTGGTTTTGATCTTGATGTCCAACTTCCTTA CAAGCCACTTGTAAATGCTTTGAAGAAATTGAACATATACCCAGATCTTGCAAAAGTAGCTTGGAATTTTGTGAATGATTGGCTTTGCACAACTTTATGC TTGCAGTACAAGCCCCATTACATTGCAGCTGGTTCCATGTATCTCGCTGCCAAATTTCAAAAGGTGAAACTTCCTACAGAGAAGGGAAATGTCTGGTGGC TGGAGTTTGACATTTCACCTAAACAATTAGAAGAGGTCATCCAACAGATGGCCAGGTTGTTAGAGCAAGATCCAAAAAGGACTCTTCCGGCAACGCATGG GAGGGTTCCACAATCTAAAGCTTCTGCCAAGAAGATGGTTACCAGTAGTGCGCAATCAGCTGTTACAAGTGTATCAATGTCTAATTCACTTGCTAGCGAT GGGGCTGTGATGGAAGCTTCATCCTCATCTGACAGAAACACCAGCCTGAATGAAGTTTTACCATGTCAAACAATTGATAGTGGTGCAAGCAGTGTTGTTG AGGATGGTGATGGTAAGAATCAGCCAAGAACAGGGGACTATGAGTTGAGCTCCAGCAGCAATATTGCCCCATCTTATAATTCCCATCATAACATTGATGT CCACCAGATTAGAGAGACATTAAAGAGACGGAGATGCCAGATAGCTGCAAAAAGTAGAGCTTCATTGTCCAATGAAACCATGGATGCTGAGTTAGATACG GAAACCTGGATAGAAAGGGAGCTAGAAGAAGGGATAGAGTTGCAAACTGCTCCTTCAGAGAAGAAACGAAGGAAGGTGTGA
AA sequence Show only first row Show all	>Potri.002G032300.1 pacid=42777365 polypeptide=Potri.002G032300.1.p locus=Potri.002G032300 ID=Potri.002G032300.1.v4.1 annot-version=v4.1 MARIATSMHLPKEPQYHTRKWYFSRQEIEDFSPSRRDGIDVEKESQLRKLYCSFIKELGVKLKVPQVTIACALILCHRFYMRQSHAKNDWKTMASASMFL ACKLEETPRLLRDVVVVAYELMHKRDPSASHRIRQIGFCSSQKELLVTGERLLLATIGFDLDVQLPYKPLVNALKKLNIYPDLAKVAWNFVNDWLCTTLC LQYKPHYIAAGSMYLAAKFQKVKLPTEKGNVWWLEFDISPKQLEEVIQQMARLLEQDPKRTLPATHGRVPQSKASAKKMVTSSAQSAVTSVSMSNSLASD GAVMEASSSSDRNTSLNEVLPCQTIDSGASSVVEDGDGKNQPRTGDYELSSSSNIAPSYNSHHNIDVHQIRETLKRRRCQIAAKSRASLSNETMDAELDT ETWIERELEEGIELQTAPSEKKRRKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	0	1
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.005G062900 [exp]	1.41	0.8316
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	3.00	0.8406
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	6.00	0.8120
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.014G094200 [exp]	9.38	0.8097
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	11.22	0.8023	MBD905,Pt-MBD5.1
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.014G089600 [exp]	11.40	0.7992
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.011G003400 [exp]	12.00	0.8237
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	14.00	0.8206
AT2G17975			zinc finger (Ran-binding) fami...		Potri.005G115100 [exp]	15.00	0.7416
AT4G33985			Protein of unknown function (D...		Potri.007G043900 [exp]	19.74	0.7652

Compare expression of checked genes

Potri.002G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.