Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75380 496 / 3e-178 ATBBD1 bifunctional nuclease in basal defense response 1 (.1.2.3) AT1G19660 494 / 1e-177 Wound-responsive family protein (.1.2) AT5G66050 111 / 7e-29 Wound-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G230600 [exp] 603 / 0 AT1G75380 463 / 3e-165 bifunctional nuclease in basal defense response 1 (.1.2.3) Potri.005G105900 [exp] 125 / 5e-33 AT5G66050 283 / 7e-94 Wound-responsive family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024277 [exp] 520 / 0 AT1G75380 452 / 4e-161 bifunctional nuclease in basal defense response 1 (.1.2.3) Lus10007390 [exp] 473 / 5e-168 AT1G19660 412 / 3e-144 Wound-responsive family protein (.1.2) Lus10028398 [exp] 114 / 3e-29 AT5G66050 261 / 1e-85 Wound-responsive family protein (.1.2) Lus10041852 [exp] 112 / 2e-28 AT5G66050 261 / 2e-85 Wound-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02577 [poplar] [flax] DUF151 Domain of unknown function (DUF151)
Representative CDS sequence Show only first row Show all	>Potri.002G032500.11 pacid=42777638 polypeptide=Potri.002G032500.11.p locus=Potri.002G032500 ID=Potri.002G032500.11.v4.1 annot-version=v4.1 ATGGTGTCGCTGCAAGGACCGGTAATATGCCCTACTGTGCGTGCAAAACAAGCAGGAAAACACGCTTTCCCGATGACTGGTCCCTTGGTGAAGGCTAGGT TGGTTAGAAGTGAATTGTGGGGATTTAAGGGTTACAAAACTAAGGTGGGTCTTACTTCTCGGCAACTGAAAGCGCGAAGATGCAATACAGTGCAGTGTAG TTTGAGCTCATCGTCAGATGGTAATGGGAGTACAGCCGAGAATTTCAATGAAAATGATGAAGATTATGTCAACTCCAGTGTCGTTGAAGCTGTTGAGGTG AAGAGTGGATCGGATGGTTTTGTTATCAAAATGAGGGATGGAAGGCACTTAAGATGTGTCCACAACAACCCTCAAGGTGGGCATCTGCCGGATTATGCTC CCCATCCTGCGATTGTATTGAAGATGGAAGATGGGACTGGTCTTCTTCTTCCAATAATTGTTTTGGAGATGCCAAGTGTGTTGCTCATGGCAGCAGTGCG CAATGTCCAAATTGCAAGACCAACTATGTATCAAGTGGTGAAGGACATGGTTGAAAAGATGGGTTTTGAAGTCAAACTTGTTAGAGTTACGAAGAGAGTG CATGAAGCATACTTTGCCCAGTTGTACCTCACTAAGATTGGTAATGAAACTGAATGTGTCAGCTTTGATCTTCGTCCATCAGATGCCATCAATATTGCTG TTAGATGCAAGGTGCCTATTCAAGTTAATAAGTACCTGGCGTACAGTGATGGAATGAGAGTCATTGAATCTGGAAAGCCAATTCAGTCTCCTGCTTCAGA TGGCATATTATTCACTGAACTTGATAGGCCCACTGGACAACCTTGTCTTGATACCAAGGAGTTTAATCTTGTGCGCAACATGTTTACAGCTGCGTTTGAG GAACGTTATGGAGATGCTGCTCAATGGAGAGACAAACTTGGTCAATTTCGGGCAAAGAGGAACTTGAAGAAATATACATGA
AA sequence Show only first row Show all	>Potri.002G032500.11 pacid=42777638 polypeptide=Potri.002G032500.11.p locus=Potri.002G032500 ID=Potri.002G032500.11.v4.1 annot-version=v4.1 MVSLQGPVICPTVRAKQAGKHAFPMTGPLVKARLVRSELWGFKGYKTKVGLTSRQLKARRCNTVQCSLSSSSDGNGSTAENFNENDEDYVNSSVVEAVEV KSGSDGFVIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTMYQVVKDMVEKMGFEVKLVRVTKRV HEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKPIQSPASDGILFTELDRPTGQPCLDTKEFNLVRNMFTAAFE ERYGDAAQWRDKLGQFRAKRNLKKYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Potri.002G032500 [exp]	0	1
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	7.54	0.9188
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Potri.017G148700 [exp]	14.14	0.9135
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	20.04	0.9018
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	20.49	0.8761	Pt-NADK2.1
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	22.11	0.9076
AT1G29120			Hydrolase-like protein family ...		Potri.011G065700 [exp]	22.13	0.8742
AT4G35750			SEC14 cytosolic factor family ...		Potri.002G014700 [exp]	28.56	0.8396
					Potri.014G179200 [exp]	30.72	0.8940
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	31.87	0.9025
AT3G58060			Cation efflux family protein (...		Potri.003G215600 [exp]	34.77	0.8957	PtrMTP8.1

Compare expression of checked genes

Potri.002G032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.