Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21520 731 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 696 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 644 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 608 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 478 / 3e-163 ATSFH3 SEC14-like 3 (.1.2.3) AT2G18180 459 / 1e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 457 / 4e-155 ATSFH12 SEC14-like 12 (.1) AT4G39180 455 / 4e-154 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 447 / 6e-151 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G16380 441 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G230500 [exp] 962 / 0 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 771 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 764 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119400 [exp] 542 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157600 [exp] 524 / 1e-180 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.005G119700 [exp] 519 / 9e-179 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 506 / 7e-174 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.011G168300 [exp] 437 / 3e-146 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G471300 [exp] 424 / 4e-141 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026356 [exp] 717 / 0 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 703 / 0 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 694 / 0 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 683 / 0 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10024276 [exp] 551 / 0 AT2G21520 602 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025988 [exp] 503 / 6e-172 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023547 [exp] 481 / 8e-164 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10040432 [exp] 480 / 5e-163 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10028332 [exp] 470 / 1e-159 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 449 / 9e-152 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G032600.10 pacid=42778909 polypeptide=Potri.002G032600.10.p locus=Potri.002G032600 ID=Potri.002G032600.10.v4.1 annot-version=v4.1 ATGTCGAGTCCGTCGGATAGCTTAGGGAGGCCTTGTCTTGAGGGGTTCTCTAGTAATGAAGAGAAAAGAGAGAGGAAATCGGATTTTGAGAACTCAGAGG AAGAAAGGAAGACTAGAATTGGGAGTTTGAAAAGGAAAGCAATGAAGGCGTCTAGTAAACTCAGGCGTTCTCTCACGAAAAGCAAGAAAAAAGGTACTGG TGGCTGCGGTGGTGGCGAAGGGGTTTCTGCTGCAATTGAGGATGTTCGAGATGTTGAGGAGCTTCGGGTTGTAGATTCATTTAAACAGTTACTTATGGCG GACGATTTGCTTCCTGCTAGACATGATGATTATCATATGTTATTGAGGTTCTTAAAAGCAAGGAAGTTTGATGTTGAGAAAGCCAAACAGATGTGGGCCA ACATGCTACAGTGGAGGAAAGACTTCGGTACTGACACAATTTTGGAGGATTTCGAGTTCAGTGAGTTGAAAGAAGTTCTAAAGTACTACCCTCAGGGTTA TCATGGTGTAGATAAGGATGGGAGACCCGTTTACATCGAAAGACTTGGAAAAGTTGATTCCAGCAAACTTATGGAAGTGACCACTTTAGAAAGATATTTG AGATATCACGTGCAGGAGTTTGAAAAGACATTCACGATTAAGTTTCCAGCTTGCTCCATTGCCGCAAAGAGACACATAGATTCAAGTACAACTATTTTGG ATGTGCAAGGACTTGGTTTAAAAAACTTCAACAAGTCCGCACGAGAACTCATCATTCAGCTCCAGAAGATTGATGGTGACAACTATCCTGAGACACTTTG CAGAATGTTTGTCATTAATGCTGGTCCTGGTTTTAAGCTGCTCTGGAAAACAGTGAAATCTTTTCTCGATCCCAACACAGCTTCCAAGATTTATGTTCTT GGTAACAAGTACCAGAGCAAGTTGCTTGAAATAATAGGCTCTAGTGAGTTGCCCGAGTTTTTAGGTGGTAGCTGTACTTGTACTGATCAGGGAGGCTGTA TGAGATCTGACAAGGGGCCGTGGAAAGATCCGAACATTTTAAAGATGGTTCTCACTGGTGAAGCACAATATTCCAGACAAATAGTAACTATTTCAAATAG TGAGGGCAGGGTAATTGCTTATGACAAGCCATTCAATCCAATGATAAAAACAAGTGATACTTCCACTGCAGAGTCAGGATCTGAAGTGGAAGATGTTGGC TCTCCGAAGCCAACTGGGAGCTATTTACTGCCAAGCCTGGTTCCTGTCTCTGAAGAAGCTAGGGTGGCTGGTAAGACGAGTGCTGCCATTTTCCCTGATA ACAATGGAAATATACCTATAATTGACAAGACAGTGGATGCTGAATTTCAAGATTCATCTACTTCCACAGGCACACCTTCTCTGTTAAGTGTAGAGAAGAT TTCAGAAGGAATCTCTGCTCGTACCTGGGCTGTGCTTGTGGCCGTCTTCATAACCCTTCTTGCTTTCTTCCGTTCAATGGCATTTTGGAAGGCCAAGAAA CACTCTGCATCTGATTCTGCCAGTGACATTACTGACCTGACCTTTGAATCGGCGCCAAAGGAGGAATTCCGACCCCCTTCTCCCACTCCAGGGTTTACTG AGGCAGACCTTCTTTCATCTGTCATGAAAAGGCTGGGTGAACTTGAGCAGAAGGTTGACACATTACAGACAATACCTTTCCAGATGCCTTGTGAAAAAGA GGAGCTACTTAATGCTGCTGTTTATCGTGTGGATGCATTAGAAGCAGAGCTAATTGCAACGAAAAAGGCTTTGCACGAAGCTTTGATCAGGCTAGAAGAA GTTCTTGCATATGTAGATGGTTGTGAAAAGGCAAGTTTTCAGAAAAAGAAGTTTTGCTGGTGA
AA sequence Show only first row Show all	>Potri.002G032600.10 pacid=42778909 polypeptide=Potri.002G032600.10.p locus=Potri.002G032600 ID=Potri.002G032600.10.v4.1 annot-version=v4.1 MSSPSDSLGRPCLEGFSSNEEKRERKSDFENSEEERKTRIGSLKRKAMKASSKLRRSLTKSKKKGTGGCGGGEGVSAAIEDVRDVEELRVVDSFKQLLMA DDLLPARHDDYHMLLRFLKARKFDVEKAKQMWANMLQWRKDFGTDTILEDFEFSELKEVLKYYPQGYHGVDKDGRPVYIERLGKVDSSKLMEVTTLERYL RYHVQEFEKTFTIKFPACSIAAKRHIDSSTTILDVQGLGLKNFNKSARELIIQLQKIDGDNYPETLCRMFVINAGPGFKLLWKTVKSFLDPNTASKIYVL GNKYQSKLLEIIGSSELPEFLGGSCTCTDQGGCMRSDKGPWKDPNILKMVLTGEAQYSRQIVTISNSEGRVIAYDKPFNPMIKTSDTSTAESGSEVEDVG SPKPTGSYLLPSLVPVSEEARVAGKTSAAIFPDNNGNIPIIDKTVDAEFQDSSTSTGTPSLLSVEKISEGISARTWAVLVAVFITLLAFFRSMAFWKAKK HSASDSASDITDLTFESAPKEEFRPPSPTPGFTEADLLSSVMKRLGELEQKVDTLQTIPFQMPCEKEELLNAAVYRVDALEAELIATKKALHEALIRLEE VLAYVDGCEKASFQKKKFCW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.002G032600 [exp]	0	1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.019G014376 [exp]	10.77	0.8882
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.009G105700 [exp]	15.49	0.8127
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	27.49	0.8121
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	27.71	0.8223	SHMT9
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.010G129532 [exp]	28.84	0.8293
					Potri.015G043301 [exp]	35.72	0.8053
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	46.13	0.8131	Pt-COL1.1
AT1G71710			DNAse I-like superfamily prote...		Potri.002G063500 [exp]	46.58	0.8167	Pt-IP5.2
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.010G232200 [exp]	48.96	0.8232
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	55.31	0.7753

Compare expression of checked genes

Potri.002G032600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.