Plant FIBer expression Database

Potri.002G032900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42810 494 / 2e-173 ATIPK1 inositol-pentakisphosphate 2-kinase 1 (.1)
AT1G22100 491 / 3e-172 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G58643 450 / 1e-155 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G59312 450 / 1e-155 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G58936 450 / 1e-155 Inositol-pentakisphosphate 2-kinase family protein (.1)
AT1G59171 54 / 3e-09 Inositol-pentakisphosphate 2-kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G230200
[exp]
748 / 0 AT5G42810 508 / 1e-178 inositol-pentakisphosphate 2-kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024274
[exp]
569 / 0 AT1G22100 521 / 0.0 Inositol-pentakisphosphate 2-kinase family protein (.1)
Lus10010640
[exp]
534 / 0 AT1G22100 491 / 3e-172 Inositol-pentakisphosphate 2-kinase family protein (.1)
Lus10033202
[exp]
58 / 1e-10 AT1G59171 81 / 6e-22 Inositol-pentakisphosphate 2-kinase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF06090 Ins_P5_2-kin Inositol-pentakisphosphate 2-kinase
Representative CDS sequence
>Potri.002G032900.1 pacid=42778504 polypeptide=Potri.002G032900.1.p locus=Potri.002G032900 ID=Potri.002G032900.1.v4.1 annot-version=v4.1
ATGGAAGTCAAAATAGAGCAAAAGGACGCGTCAGATTGGTCCTACAGAGGTGAAGGTGCTGCTAATATAGTTCTCGCCTACACTGGATCATCGCCCTCTT
TTATTGGGAAAGTAATGAGGATAACAAAAAAAGCAAGGAACGGGTCGTCACCGAAGTGTGACTCTAACCAATCAGTATTAACAGAGGAAGAGCGGTTGTT
ATGGAGAGACGTGGAAGAGTTAGTTACCTCTCCTACGAAAGAAATTGCAGAGCAGATTTATACTCAGCTAGTTATGAGTCCTTTGTTAGGTTCCAAACAT
GTCGATGCTGGGATGCGTGTGCCAGTAACGAGGGATTTTCTTGAGTGTGTTGAAAAGAATGTAATTAAACAACGTCCGGCTTGGCGAATTGATGTTTCAG
TGGTTGATTTGGAACGTGATTTTGTGATTATCATGTCTGATCATTCTCTATTCCCTGGAGGTGTTCTTAAAGATGAACCTTGCATATCAGTTGAGATAAA
GCCCAAATGTGGATTTATCCCTTCATCAGAATTCATAGCTGAAAGAAATTCTGTTAAGAGGAGTGCTACTCGTTTTCAAATGCACCAAGTCTTGAAGTTG
CGTGAACAGGAGATATCAGAATTAAGCGAGTATGATCCTCTGGATCTGTTTTCTGGTTCCAAGGAAAGAATACATAAAGCCATCAAGGATCTGTACACCA
CTCCTCAGAACAATTTCCGTGTATTCTTGAATGGTTCTCTTATATTCGGGGGCTTGGGCGGTGGCATAAAGAGAACTAATGCTGTGGCTGGAAAAGCTTT
TGAAGACGCACTCGAGGGCATCATCCTGGCTGAAAATGGCTTGCGCACAACGAGTTTTATACAGCTTGTTGCTGAGGCAGTTTACTGCTCTAGAGTATTG
GACGGGCTTCTTGAAGTTCAAAGGCTTGATAATTTTGACATTGAAGGGGCCATTCATGCATATTACAACATTGTTTGTCAGCCTTGTGCGATATGCCAAC
AGTTGGATGAAGCAAGACCACCACATAGATGTTCCTCCTTGCATTCCATTCATATGGATGAGAGTTTGAAAATTGCAAAGGATTATTTGATAGCTGCTAC
TGCAAAGGACTGTAGTTTGATGATTAGTTTTAGACCAATGAAAGATGGAGCGTTTGGATCTCCTCATGTATACCTACAGTCAACCAACCAAAGTTTTAAT
TACAAGGTGAATTTCATTGACTTGGATTTAAAACCTTTAAAGAAGATGGTAGACTACTATGAATTGGACAAGAAGATATTGAACTGCTTCACTCAGATGT
TGGAAATGGAGCATAAAGATGGCAATGCTAGGACCATGGATGCGATTGAAACTATAAATTGA
AA sequence
>Potri.002G032900.1 pacid=42778504 polypeptide=Potri.002G032900.1.p locus=Potri.002G032900 ID=Potri.002G032900.1.v4.1 annot-version=v4.1
MEVKIEQKDASDWSYRGEGAANIVLAYTGSSPSFIGKVMRITKKARNGSSPKCDSNQSVLTEEERLLWRDVEELVTSPTKEIAEQIYTQLVMSPLLGSKH
VDAGMRVPVTRDFLECVEKNVIKQRPAWRIDVSVVDLERDFVIIMSDHSLFPGGVLKDEPCISVEIKPKCGFIPSSEFIAERNSVKRSATRFQMHQVLKL
REQEISELSEYDPLDLFSGSKERIHKAIKDLYTTPQNNFRVFLNGSLIFGGLGGGIKRTNAVAGKAFEDALEGIILAENGLRTTSFIQLVAEAVYCSRVL
DGLLEVQRLDNFDIEGAIHAYYNIVCQPCAICQQLDEARPPHRCSSLHSIHMDESLKIAKDYLIAATAKDCSLMISFRPMKDGAFGSPHVYLQSTNQSFN
YKVNFIDLDLKPLKKMVDYYELDKKILNCFTQMLEMEHKDGNARTMDAIETIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42810 ATIPK1 inositol-pentakisphosphate 2-k... Potri.002G032900
[exp]
0 1
AT1G55090 carbon-nitrogen hydrolase fami... Potri.001G087400
[exp]
6.78 0.7739
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Potri.010G076700
[exp]
12.04 0.7766
AT2G45150 CDS4 cytidinediphosphate diacylglyc... Potri.014G060100
[exp]
12.24 0.7320
Potri.005G099266
[exp]
15.81 0.7556
AT5G63060 Sec14p-like phosphatidylinosit... Potri.015G080100
[exp]
24.24 0.6949
AT4G32980 HD ATH1 homeobox gene 1 (.1) Potri.018G054700
[exp]
27.34 0.6755
AT5G51820 STF1, PGM1, ATP... STARCH-FREE 1, ARABIDOPSIS THA... Potri.015G134700
[exp]
30.33 0.7063
AT1G49390 2-oxoglutarate (2OG) and Fe(II... Potri.003G030451
[exp]
31.22 0.7221
AT5G22390 Protein of unknown function (D... Potri.009G162800
[exp]
32.00 0.7561
AT5G59770 Protein-tyrosine phosphatase-l... Potri.001G235400
[exp]
34.46 0.6853

Potri.002G032900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.