Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75350 178 / 2e-58 EMB2184 embryo defective 2184, Ribosomal protein L31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033200 [exp] 163 / 1e-52 AT1G75350 167 / 4e-54 embryo defective 2184, Ribosomal protein L31 (.1) Lus10010639 [exp] 163 / 1e-52 AT1G75350 169 / 5e-55 embryo defective 2184, Ribosomal protein L31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01197 [poplar] [flax] Ribosomal_L31 Ribosomal protein L31
Representative CDS sequence Show only first row Show all	>Potri.002G033300.2 pacid=42778717 polypeptide=Potri.002G033300.2.p locus=Potri.002G033300 ID=Potri.002G033300.2.v4.1 annot-version=v4.1 ATGGCACTTAGTCTGACTAACACTTTCCTCCAAACCAAACCAATCTCCCTTCCTCTCCCACCCATCAAAAAGGTGAAAGTGAGTGCGGCAGGGAATTACG GGCTGCAAGTGACGTGCAGGAAGAAAGAAATACACCCAGAGTTCTATCAAGACGCCAAGGTGTATTGCAATGGAGAGCTAGTGTTGACAACAGGTGGGAC CAAGCAAGAGTACGTGGTGGATGTGTGGTCAGGCAACCATCCGTTTTACCTCGGAAATCGGTCCGGTGTTCTCGTAGATGCTGACCAGGTGGAGAAGTTC CGTAAGAAATACGAAGGGCTTTCGCAGATTATGGAAATTCCTGTACTTAAAGGTGAGGTTATTTTGCCTAGCAGGAAAAAATCTTCTGCTGGTAAAGGGG GCAAGAAGAAGTAG
AA sequence Show only first row Show all	>Potri.002G033300.2 pacid=42778717 polypeptide=Potri.002G033300.2.p locus=Potri.002G033300 ID=Potri.002G033300.2.v4.1 annot-version=v4.1 MALSLTNTFLQTKPISLPLPPIKKVKVSAAGNYGLQVTCRKKEIHPEFYQDAKVYCNGELVLTTGGTKQEYVVDVWSGNHPFYLGNRSGVLVDADQVEKF RKKYEGLSQIMEIPVLKGEVILPSRKKSSAGKGGKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Potri.002G033300 [exp]	0	1
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Potri.004G217000 [exp]	1.41	0.9838	Pt-RPL9.3
AT5G07020			proline-rich family protein (....		Potri.003G192800 [exp]	2.23	0.9846
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.003G132400 [exp]	2.44	0.9823
AT5G64480			unknown protein		Potri.001G286200 [exp]	3.87	0.9818
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	5.29	0.9822
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.018G026500 [exp]	6.70	0.9786
AT4G17560			Ribosomal protein L19 family p...		Potri.001G152200 [exp]	8.77	0.9797
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Potri.010G078800 [exp]	9.38	0.9788
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	9.48	0.9691
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.001G099300 [exp]	9.79	0.9799

Compare expression of checked genes

Potri.002G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.