Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DFR1,Pt-DFR.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42800 523 / 0 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT2G45400 265 / 1e-86 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 264 / 1e-86 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G61720 256 / 3e-83 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 244 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G51410 243 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 233 / 9e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 232 / 4e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 228 / 9e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 216 / 1e-67 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229500 [exp] 628 / 0 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 311 / 3e-105 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 311 / 3e-105 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 310 / 2e-104 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 308 / 6e-104 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 308 / 7e-104 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 307 / 2e-103 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 305 / 1e-102 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 303 / 7e-102 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041031 [exp] 516 / 0 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10006195 [exp] 291 / 1e-98 AT5G42800 269 / 6e-90 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 271 / 6e-89 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 268 / 9e-88 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 247 / 2e-79 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10006141 [exp] 245 / 3e-79 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10026070 [exp] 245 / 4e-79 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 242 / 7e-78 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 240 / 4e-77 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 238 / 5e-76 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.002G033600.1 pacid=42776701 polypeptide=Potri.002G033600.1.p locus=Potri.002G033600 ID=Potri.002G033600.1.v4.1 annot-version=v4.1 ATGGGAACAGAAGCTGAAACAGTGTGTGTGACAGGTGCATCAGGCTTCATCGGATCATGGCTAATTATGCGACTACTAGAGAAAGGTTATGCTGTCCGAG CCACCGTCCGAGACCCTGATAACATGAAGAAGGTGACGCATTTGCTGGAATTGCCAAAGGCATCAACCCACTTGACTTTATGGAAAGCTGATCTTTCTGT AGAGGGGAGTTATGATGAAGCAATTCAAGGGTGCACAGGAGTGTTCCATGTTGCCACTCCCATGGATTTTGAGTCCAAGGACCCCGAGAACGAGGTGATC AAGCCAACAATCAACGGAGTACTGGACATCATGAGAGCATGTGCCAATTCAAAAACAGTTAGAAAGATAGTATTCACGTCATCTGCAGGAACTGTGGATG TTGAAGAAAAGAGAAAACCAGTGTACGATGAAAGCTGCTGGAGTGATTTGGACTTTGTTCAGAGTATAAAAATGACTGGATGGATGTATTTCGTGTCCAA GACTTTAGCAGAGCAAGCTGCATGGAAGTTTGCTAAAGAGAATAACCTGGATTTTATCAGCATCATACCAACTCTTGTTGTTGGCCCATTTATCATGCAA TCAATGCCACCAAGTCTCCTGACAGCACTTTCATTGATCACTGGAAATGAAGCTCATTATGGGATTTTAAAGCAGGGACATTATGTGCACTTGGATGACC TCTGCATGTCTCACATCTTTTTGTATGAGAATCCAAAAGCAGAGGGCCGCTACATCTGCAACTCGGATGATGCTAACATTCACGATCTTGCTAAATTACT CCGAGAAAAATACCCAGAATACAATGTCCCTGCTAAGTTCAAAGATATTGATGAGAATTTGGCGTGTGTTGCTTTCTCATCCAAAAAGCTGACGGACTTG GGTTTTGAGTTCAAATACAGCTTGGAGGACATGTTCGCAGGTGCTGTGGAAACATGCAGAGAAAAGGGACTAATTCCCCTTTCTCATAGGAAACAAGTCG TCGAGGAATGCAAAGAAAATGAAGTGGTCCCTGCGTCCTGA
AA sequence Show only first row Show all	>Potri.002G033600.1 pacid=42776701 polypeptide=Potri.002G033600.1.p locus=Potri.002G033600 ID=Potri.002G033600.1.v4.1 annot-version=v4.1 MGTEAETVCVTGASGFIGSWLIMRLLEKGYAVRATVRDPDNMKKVTHLLELPKASTHLTLWKADLSVEGSYDEAIQGCTGVFHVATPMDFESKDPENEVI KPTINGVLDIMRACANSKTVRKIVFTSSAGTVDVEEKRKPVYDESCWSDLDFVQSIKMTGWMYFVSKTLAEQAAWKFAKENNLDFISIIPTLVVGPFIMQ SMPPSLLTALSLITGNEAHYGILKQGHYVHLDDLCMSHIFLYENPKAEGRYICNSDDANIHDLAKLLREKYPEYNVPAKFKDIDENLACVAFSSKKLTDL GFEFKYSLEDMFAGAVETCREKGLIPLSHRKQVVEECKENEVVPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.002G033600 [exp]	0	1	DFR1,Pt-DFR.2
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.004G105000 [exp]	1.00	0.9603
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176800 [exp]	2.44	0.9323	CHS.5
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	3.46	0.9400	Pt-CHS.7
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207600 [exp]	5.29	0.9008
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.004G030700 [exp]	5.65	0.9003	BAN.2,ANR/BAN1
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	6.00	0.9299
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207500 [exp]	7.07	0.9070
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	7.74	0.9012
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006800 [exp]	8.60	0.7511
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176900 [exp]	9.48	0.8990	CHS6,Pt-CHS.4

Compare expression of checked genes

Potri.002G033600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.