Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AUL1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 234 / 8e-62 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G12780 188 / 2e-48 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 187 / 4e-48 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 169 / 3e-44 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 122 / 3e-28 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 88 / 2e-17 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229300 [exp] 923 / 0 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 278 / 2e-75 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 275 / 1e-74 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 214 / 1e-56 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G197600 [exp] 211 / 2e-55 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 174 / 7e-46 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 171 / 2e-44 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 122 / 8e-29 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 119 / 5e-27 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024270 [exp] 244 / 4e-65 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 238 / 2e-63 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10010642 [exp] 233 / 1e-61 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10041769 [exp] 230 / 1e-60 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10033205 [exp] 229 / 2e-60 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10012303 [exp] 195 / 2e-50 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016079 [exp] 193 / 7e-50 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 190 / 5e-48 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 176 / 1e-43 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10028548 [exp] 152 / 1e-37 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G033800.4 pacid=42777962 polypeptide=Potri.002G033800.4.p locus=Potri.002G033800 ID=Potri.002G033800.4.v4.1 annot-version=v4.1 ATGGAGCACCAGCAAGTCTCCTCTGTCTCTGCTGCTGCTCCGTTTTCAAAGAAGTTTAGTTATGACCGTGGACATGGCGGAAAGCATGTGTACGACGGCG TTTTTAGTGGTGGTGGTGGTGCAGTGAAGCTCGGGGCTCGAGTGTTGGATTATAGAGAGATATTTGGTGGGACTGCTGCTACTGCTTCATCGATTCCGAT TCTTGATGTTCCCGAGCTGAATGAGAACAGTAAGGTCTCTTCTTTTGGTGCACAAAGGGCTGATTACGCCACTATTTTCGGTGGTTTTGGAGATGATGAT TTTGGTTTGCTTCACGAAGAACTCTTTGCTAAACGAAAGAAAGTCAAGAGTTCTATCAATGGAACTCGGTCTCTAGCTGAAGCAAGGTCGCGGAATGCCG GGTCAAAACATTCTAATGTCTCAAAAGAGCAAAAAGATTCATCACCTGAAGCGCCATTCCAGTCGATTGATGGTGTAAAACTGCTTAACGTGTCTTATAA TAAAAGCAACCCAGGGAACAAAAATGGGACAAATGGAATGACACGTGTTGCTCAACTTCATGCAGTTCCTGGCTATACTTTTCTAGTTGATGAAATCACT CCCTCAAAGATGACTGAAGGTGGCAAGCCAGCACGATCAGTCCTAAATGATTCTCATCTCAATGCTAATGTTGGTAAGAGTGTGAAGGAAGACACAGCTC GCAGGAAAGCTGTGTCAGGTCCACAACCCAGAATTGCTGACACAAATAGTTTTAGAAGTCCTGCTGAGTTTCAGAAGAAATCAAGTCGAAATAGATCCAT TTCGAATGATATGCCTTTTGATGCATTTGAAATTGGCCTAGGCAGACGTCCACCTTCAAGCTCACCAACTAATTCCAGCTATAATATTGGTGGCACCGAT ATATCAAAGAATTCCAAGTTTGGAGTTTCTAGAAATGATGCTTCTAGAGGTGCAGATTTACTAGCTTCTTCTGATGAGGAAATGGATGCAAATTCAGATG CTGCTGCCTCAGCAGCTGCACTTAGAAAGGCAATAGAGGAGGCTCAAATGAAGATTAAAATTGCAAAAGAATTGATGGAAAGAAAGAACGAAGGGTTTCA AAATCGTGCAAAGACAGGCTTTAATAAAAGCTGGAAAGCTCAGAAGAGCGAGGTTAAAACTGAAGAAAGATTAAAAAGATCCAATGAGCTGGTGGATCGG GAAATGCGTGAAAAAGAGGATACTGCAAAGCAAGAATTCACTGGCGTATCAGAGGGTAATGTGTCAAAAGCAAGCCAACTAACTCCAGATTTTGGAGATG AGAAGAAATCTTCTTTTGCTAATAATGCTGCTGGAGAAACACACAGCAAGGAATCCAAATCAACTAGAACAGATAATAGGCTGGAAGCAGAAGACTGGGA ATCAACAGAAGAGTTTTTTGAAGCTGCGGACTATGAGGAGCTCAGGGAAATGCCATCAGAATTTGAGCAGTCAGACAATGCAGAGAAAATGGCATCATAT AATCATGAAAATAAATGGAGCGAGAAGATGACTGCAGAAGAAAAAATAAAAAAGCCAGAGGAGTGCACTGAGGAAGTTTTTAATGAGGACAAGGTCGAGA GAGAACTAAATTCAGTGGTAGGAGCATTTCGGTGGAATTTATATGCAAACTTTGTTAAGCCATCACAAGTTTGCCATCCGGAAGAAAATGAAAACAAAAC GAGAATTTCTAATAACCATGAAGAAACTTATCAAACACCTACAGTCTCTGATGAATGGAATGACTGTGAAACTGTGCTGGAAAATCTTCACCAACCTGAA GAAAACGTAAAACTTCCAGTCCAGGAGTTGGATGAAAATGAAGATATGAAGGAACTAAAAGATGCTCAGGACTGGGTGGAAACCGAGAAGAAACAAAGGG AGGCATTGGATCAAAAGGAAACGGATAATAGATCAGATGAAGTTTCTATCAGGGAGGAGAATGACAGAGACCTTGATCAGATATATGAGAAAAAACAAAA TGTGGAGGGACAGCAAGAAGAACGGGACAGGGTAGAATGTGAAATGAAACAAGGAGGTTGGAACCTGGAAGAATATGCGGAGAAACTAAATGATTTGCAC AGGGGAGAAATATCAGGCGATGATGGTGAGACAGAAGAGAGTGAGAAGCCAGAAAAACTAGTGGATGATGAGGAGATACTCAAAAAAAGTGATCAGATGA ATGAACCTGAAGAAAGCACAAAACTTCCGGTCCATGAGTTGGCGGAAAATGAAGATATGAAGGAACTAAAGGATTGGGTGGAAACCGAGAAGCAACGAAG GGAGGCATTAGATCAAAAGGAAACAGAGAATAGATCAGATGAAGTTCCTATTAGGGAGGAGAATGACAGAGGCCTCAATCAGATATATGAGAAAGAAGAA AATGTGGAGGGACAGCTAGAAGAACGGGACAGGGTAGAATGTGAAATGAAACAAGGAGGTTGGAACCTGGAAGAATATGCGGAGAAACTAAATGATTTGC ACAGGGGAGAAATATCAGGCGAAGATGGTGAGACAGAAAAGAATGAGAAGCTGGATAAACTTGTGGATGATGAGGAGATACTAAAAAAAAGTGATCAGAT GAATGGAACTGAAGAAAACGCAGAACTTCCAGTCCAGGAGTTGGAGGAAAATGAAGATATGAAGGGACTAAAAGATCCTCAGGACTGGGTGGAAACCGAG AAGAAACAAAGGGAGGCACTAGATCATAGGGAAATGGAGAATAGATCAGATGAAGTTCCTATTGGAGAGGAGAGCGACGGAGGCCTCGATCAGATATATG AGAAGAAAGAAAACATGGAGGGACAGCGAAAAGAATGGGACCGGGTAGAATGTGAAATGAAACAAGGAGGTTGGAACCTAGAAGAAAATGAGAAACTAAA TGACTTGCACAGAAGAGAAATATTAGGCGAAGAGGGTAAGATAGAAGAGAGTGAGAAGCCAGAAGAACTCATGGATGATGAGGAAATACTCAAAAAGAGT GATCAGATAAATGAAACTGAGAATAGAGAAGAGAAGGCACGCGAAGGGATAGAAACTGAGAGGATAAGATCCAAGAGTTGCCTGGGGGAACAAGATGAGA AGACCATGGAAGTGACTGAACAGGCCTTAAGATACGAGGGGGACAATCTTGAAATGGCCGAGGATGCAAATGAGCAGTATGAAAATGAGAACCTGGGTGG GAGTGACAATGCCTTGGGATGTAAAATAAACTTTGCTGTTGGGGATTTAAAGGCAGAGGTACTTACTGTCAAGGAGAATGGAAGGGTAATGAGGGTAACT GAATCTTCCCCTCTATTACAAGGGACTGAGAAGGAGTCAGAGGCAGTTGAAGATGCGAACAACCTGGAGCAACAGAATTGTGAAATTGCAGGCCTCACTC AAGGTCTCATTGGACTCGATAGGATTAAGAAGCAAACTGCAGATGTGACTGAGGCTCTTCTTAATGGAGAAAATGGGATATATTTAGGTGAAAATGACAT TAACTTTGATGACAAGCAAAATGAGCATCATGTGACAGAATACAAGAACATGTCCAATCAGGAAAAATGCTTTGAAGAAGTAAATAATGAAATGGATGAT AATGGTAATGTTGATATCTGTGAACCTGAAGTTGGCACGGATAATGAAGAAAGTGAGAAAAGTTCGATATCATCTCACAATGAAAGATGGTCCAGTGACG AGACAGAATCACTTCATGATCCAGAGTGTTGTGTTGAAGAAGCTGCTCACGAATTGGGAGAAAATAATAATGATGTCAAGGAGTCTGAAGTTGCAACAAA TCATGAAAAAGACAAGAATTCTTTTGAATCTTCTGAGGAAGATAGATGGGTAGGTAATGGTGTAGATACTGAAGCAAGTCAGCAACCTATATTCGAAGGG CAAGGGAAGACCACAGAGATATCCTTGGAAGAGGAACCGAACCAAAGCACCAGCAAGAAAGAGGAGAATCATTGCAAGAATCCAGCAATAGAAGAGAAGG AAGCTGAAGATAATTTGCAAAGGAAATTGGAGGTGGAGAAGAAACACTTCAGTAAAAAGGAAGAAGTAAAAGTGAGGGAAATAGAAAGAGAAAAGGAGAG AATAGCTGTCGAAAGGGCAATACAAGAAGCTCGTGAAAGGGCTTTTGCAGAAGCCCGAGAAAGGGCTGCTGTCAAGAGAGCAGCTGCAGAAGCTCATCAA AGGTTAAAGGCTGAGGTCAGAGAAAGGCTAGGGAAGGCTCTTCTAGAGGCCAATAATAAGTTGGCAGCTGAGAAGGCCTCATTTGAAGCCAAACTAAAAG CTGAACGTGCTGCAGTAGAGAGAGCAACCACAGAGGCCAGGCAGCGTGCCCTTGAAAAAGCTTTGTCTGAGAAGGTTGCTTTTAAAGCAAGAAATCAGGC TGAAAAGTCTGCAGCTGAGAGATTTTCAAGTATTTCAAAAGATAATGGGATGAATTCCAGACAGGATAAACAATGCAATGACCCAGGTCCTTCTAGCAGT TCAAGGTATCCAGGCTCTTCAAATCATGGTGAAAGATTTAATGGAGGTAATGGTGAATCCGATCCAAGGAATAAAGCCACATTGGAAAGGCATCAAAGAA CAGCAGAGCGTGCGGCAAAAGCTCTCGCAGAGAAGAATATGCGCGAACTTCTTGCTCAGAAAGAGCAGGCAGAAAGAAATAGACTGGCAGAAACTTTGGA AGCTGATGTCAAGAGATGGTCAAGTGGGAAGGAGAGGAACTTGCGTGCTCTGCTTTCAACACTGCCATATATCCTTGGCCCTGATAGTGGCTGGCAGCCA ATTCCTTTGACTGAACTTGTGTCAAGTACTGCTGTGAAAAAAGCTTATCGCAAGGCCACGCTATTTGTTCACCCTGACAAGTTGCAACAACGAGGTGCAA GCATACAGCTGAAATACACCTGTGAGAAGGTTTTTGATCTTCTAAAGGATGCTTGGAACAAATTCAGTGCAGAAGAACGGTAG
AA sequence Show only first row Show all	>Potri.002G033800.4 pacid=42777962 polypeptide=Potri.002G033800.4.p locus=Potri.002G033800 ID=Potri.002G033800.4.v4.1 annot-version=v4.1 MEHQQVSSVSAAAPFSKKFSYDRGHGGKHVYDGVFSGGGGAVKLGARVLDYREIFGGTAATASSIPILDVPELNENSKVSSFGAQRADYATIFGGFGDDD FGLLHEELFAKRKKVKSSINGTRSLAEARSRNAGSKHSNVSKEQKDSSPEAPFQSIDGVKLLNVSYNKSNPGNKNGTNGMTRVAQLHAVPGYTFLVDEIT PSKMTEGGKPARSVLNDSHLNANVGKSVKEDTARRKAVSGPQPRIADTNSFRSPAEFQKKSSRNRSISNDMPFDAFEIGLGRRPPSSSPTNSSYNIGGTD ISKNSKFGVSRNDASRGADLLASSDEEMDANSDAAASAAALRKAIEEAQMKIKIAKELMERKNEGFQNRAKTGFNKSWKAQKSEVKTEERLKRSNELVDR EMREKEDTAKQEFTGVSEGNVSKASQLTPDFGDEKKSSFANNAAGETHSKESKSTRTDNRLEAEDWESTEEFFEAADYEELREMPSEFEQSDNAEKMASY NHENKWSEKMTAEEKIKKPEECTEEVFNEDKVERELNSVVGAFRWNLYANFVKPSQVCHPEENENKTRISNNHEETYQTPTVSDEWNDCETVLENLHQPE ENVKLPVQELDENEDMKELKDAQDWVETEKKQREALDQKETDNRSDEVSIREENDRDLDQIYEKKQNVEGQQEERDRVECEMKQGGWNLEEYAEKLNDLH RGEISGDDGETEESEKPEKLVDDEEILKKSDQMNEPEESTKLPVHELAENEDMKELKDWVETEKQRREALDQKETENRSDEVPIREENDRGLNQIYEKEE NVEGQLEERDRVECEMKQGGWNLEEYAEKLNDLHRGEISGEDGETEKNEKLDKLVDDEEILKKSDQMNGTEENAELPVQELEENEDMKGLKDPQDWVETE KKQREALDHREMENRSDEVPIGEESDGGLDQIYEKKENMEGQRKEWDRVECEMKQGGWNLEENEKLNDLHRREILGEEGKIEESEKPEELMDDEEILKKS DQINETENREEKAREGIETERIRSKSCLGEQDEKTMEVTEQALRYEGDNLEMAEDANEQYENENLGGSDNALGCKINFAVGDLKAEVLTVKENGRVMRVT ESSPLLQGTEKESEAVEDANNLEQQNCEIAGLTQGLIGLDRIKKQTADVTEALLNGENGIYLGENDINFDDKQNEHHVTEYKNMSNQEKCFEEVNNEMDD NGNVDICEPEVGTDNEESEKSSISSHNERWSSDETESLHDPECCVEEAAHELGENNNDVKESEVATNHEKDKNSFESSEEDRWVGNGVDTEASQQPIFEG QGKTTEISLEEEPNQSTSKKEENHCKNPAIEEKEAEDNLQRKLEVEKKHFSKKEEVKVREIEREKERIAVERAIQEARERAFAEARERAAVKRAAAEAHQ RLKAEVRERLGKALLEANNKLAAEKASFEAKLKAERAAVERATTEARQRALEKALSEKVAFKARNQAEKSAAERFSSISKDNGMNSRQDKQCNDPGPSSS SRYPGSSNHGERFNGGNGESDPRNKATLERHQRTAERAAKALAEKNMRELLAQKEQAERNRLAETLEADVKRWSSGKERNLRALLSTLPYILGPDSGWQP IPLTELVSSTAVKKAYRKATLFVHPDKLQQRGASIQLKYTCEKVFDLLKDAWNKFSAEER

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.002G033800 [exp]	0	1	AUL1.3
AT5G20600			unknown protein		Potri.012G036500 [exp]	2.44	0.8827
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.010G247900 [exp]	2.82	0.8663
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	5.91	0.8496
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	8.12	0.8669
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.006G258300 [exp]	9.74	0.8100
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	11.00	0.8320
AT1G07980	CCAAT	NF-YC10	"nuclear factor Y, subunit C10...		Potri.009G012300 [exp]	11.40	0.8349
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.006G187700 [exp]	11.83	0.8602
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	13.26	0.8166
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.005G112800 [exp]	14.24	0.7975

Compare expression of checked genes

Potri.002G033800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.