Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APFI.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19580 498 / 1e-180 GAMMACA1 ,GAMMA CA1 gamma carbonic anhydrase 1 (.1.2) AT1G47260 469 / 2e-169 APFI, GAMMACA2 ,GAMMA CA2 gamma carbonic anhydrase 2 (.1) AT5G66510 406 / 8e-145 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2) AT5G63510 144 / 1e-41 GAMMACAL1 ,GAMMA CAL1 gamma carbonic anhydrase like 1 (.1.2) AT3G48680 143 / 2e-41 AtCAL2, GAMMACAL2 ,GAMMA CAL2 gamma carbonic anhydrase-like 2 (.1) AT1G47420 84 / 7e-19 SDH5 succinate dehydrogenase 5 (.1) AT2G17640 42 / 0.0003 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1) AT4G35640 40 / 0.0008 ATSERAT3;2 serine acetyltransferase 3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229000 [exp] 540 / 0 AT1G19580 498 / 0.0 gamma carbonic anhydrase 1 (.1.2) Potri.005G120800 [exp] 506 / 0 AT1G19580 480 / 7e-174 gamma carbonic anhydrase 1 (.1.2) Potri.015G098600 [exp] 143 / 1e-41 AT3G48680 374 / 2e-132 gamma carbonic anhydrase-like 2 (.1) Potri.012G100400 [exp] 141 / 8e-41 AT3G48680 389 / 3e-138 gamma carbonic anhydrase-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024267 [exp] 503 / 0 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10001959 [exp] 503 / 0 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10028321 [exp] 483 / 6e-175 AT1G19580 467 / 1e-168 gamma carbonic anhydrase 1 (.1.2) Lus10041768 [exp] 476 / 4e-172 AT1G19580 459 / 2e-165 gamma carbonic anhydrase 1 (.1.2) Lus10031278 [exp] 146 / 1e-42 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031845 [exp] 146 / 1e-42 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031847 [exp] 66 / 2e-13 AT3G48680 179 / 7e-58 gamma carbonic anhydrase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0536 [poplar] [flax] HEXAPEP PF14602 [poplar] [flax] Hexapep_2 Hexapeptide repeat of succinyl-transferase
Representative CDS sequence Show only first row Show all	>Potri.002G034100.2 pacid=42778362 polypeptide=Potri.002G034100.2.p locus=Potri.002G034100 ID=Potri.002G034100.2.v4.1 annot-version=v4.1 ATGGGGACCCTAGGCAGAGCCATATACACCGTCGGATTCTGGATTCGCGAGACCGGCCAAGCTCTTGATCGTCTAGGAGGCCGCCTTCAAGGCAACTACT ACTTCCAAGAACAACTGTCCAGGCATCGAACTCTAATGAACATATTTGACAAGGCTCCTGTAGTTGATAAGGATGCATTTGTGGCTCCCAGCGCCTCTGT AATTGGGGATGTTCAAGTTGGAAAAGGATCATCCATCTGGTATGGATGTGTGTTGAGAGGTGATGTCAACAGCATCAGTGTTGGATCTGGAACTAATATA CAAGACAACTCCCTTGTGCATGTGGCAAAATCTAATCTAAGTGGGAAGGTGCTACCAACTATCATTGGGGACAATGTTACTGTAGGTCACAGTGCTGTTG TACATGGATGTACTGTTGAGGATGAGGCTTTTGTCGGTATGGGAGCAACACTTCTTGATGGTGTTGTTGTTGAGAAACATGCTATGGTTGCTGCTGGAGC TCTTGTGAGACAGAATACAAGGATCCCTACTGGAGAGGTATGGGGAGGCAATCCTGCAAAGTTTTTGAGGAAGTTGACTGATGAAGAGATAGCCTTTATT GCCCAGTCAGCCACCAACTACTCAAACCTTGCACAGGTTCATGCAGCTGAGAATGCAAAGCCTTTTGATGAGATTGAGTTTGAGAAGGTTCTTCGCAAAA AGTTTGCGAAGAAGGACGAGGAGTATGACTCTATGCTAGGTGTTGTGCGTGAACTCCCCCCTGAACTTATTCTTCCAAACAATGTCCTACCAGATAAAGA ACATAAGGCAAAATGA
AA sequence Show only first row Show all	>Potri.002G034100.2 pacid=42778362 polypeptide=Potri.002G034100.2.p locus=Potri.002G034100 ID=Potri.002G034100.2.v4.1 annot-version=v4.1 MGTLGRAIYTVGFWIRETGQALDRLGGRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAFVAPSASVIGDVQVGKGSSIWYGCVLRGDVNSISVGSGTNI QDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVVHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPTGEVWGGNPAKFLRKLTDEEIAFI AQSATNYSNLAQVHAAENAKPFDEIEFEKVLRKKFAKKDEEYDSMLGVVRELPPELILPNNVLPDKEHKAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	0	1	APFI.1
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	1.00	0.9527	Pt-ANT1.1
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.016G015400 [exp]	1.41	0.9523
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.003G086100 [exp]	2.82	0.9508
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.009G026800 [exp]	3.16	0.9450
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	3.16	0.9506
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G330200 [exp]	3.46	0.9419
AT4G16450			unknown protein		Potri.006G016300 [exp]	4.58	0.9481
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	4.89	0.9509
AT5G45620			Proteasome component (PCI) dom...		Potri.001G135200 [exp]	4.89	0.9315
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.009G071600 [exp]	5.29	0.9294

Compare expression of checked genes

Potri.002G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.