Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RER1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21600 265 / 2e-91 ATRER1B endoplasmatic reticulum retrieval protein 1B (.1) AT4G39220 253 / 1e-86 ATRER1A Rer1 family protein (.1) AT2G18240 215 / 4e-71 Rer1 family protein (.1.2) AT2G23310 202 / 2e-66 ATRER1C1, ATRER1C Rer1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228900 [exp] 338 / 4e-120 AT2G21600 235 / 1e-79 endoplasmatic reticulum retrieval protein 1B (.1) Potri.004G156900 [exp] 256 / 7e-88 AT4G39220 245 / 1e-83 Rer1 family protein (.1) Potri.009G118500 [exp] 253 / 2e-86 AT4G39220 224 / 2e-75 Rer1 family protein (.1) Potri.007G047800 [exp] 224 / 3e-75 AT4G39220 194 / 3e-63 Rer1 family protein (.1) Potri.004G156800 [exp] 208 / 5e-69 AT4G39220 251 / 6e-86 Rer1 family protein (.1) Potri.005G141700 [exp] 198 / 1e-64 AT2G23310 200 / 2e-65 Rer1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041766 [exp] 253 / 8e-87 AT2G21600 248 / 7e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10028319 [exp] 253 / 1e-86 AT2G21600 249 / 4e-85 endoplasmatic reticulum retrieval protein 1B (.1) Lus10041765 [exp] 249 / 1e-84 AT4G39220 250 / 5e-85 Rer1 family protein (.1) Lus10028317 [exp] 249 / 1e-84 AT4G39220 254 / 8e-87 Rer1 family protein (.1) Lus10011502 [exp] 209 / 7e-69 AT4G39220 258 / 3e-88 Rer1 family protein (.1) Lus10019323 [exp] 206 / 7e-68 AT4G39220 259 / 6e-89 Rer1 family protein (.1) Lus10002889 [exp] 114 / 5e-33 AT4G39220 119 / 4e-35 Rer1 family protein (.1) Lus10002890 [exp] 95 / 1e-25 AT4G39220 112 / 7e-33 Rer1 family protein (.1) Lus10015498 [exp] 56 / 7e-10 AT4G28040 141 / 5e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03248 [poplar] [flax] Rer1 Rer1 family
Representative CDS sequence Show only first row Show all	>Potri.002G034200.2 pacid=42778525 polypeptide=Potri.002G034200.2.p locus=Potri.002G034200 ID=Potri.002G034200.2.v4.1 annot-version=v4.1 ATGGAAGGAAATGGTGGTGATGCTGCCAATGTGGTGGGACCTGTTGCGAAGTGGAGAAATGATTTCTCTCGGGCATTCCAATACTATCTCGACCGATCCA CTCCTCATCCGATGCAGAGGTGGCTTGGAACTCTTGCGGTTGCAGCAATTTATGTGTTGCGTGTTTTCTATGCTCAAGGGTTTTACATTGTGTCTTATGG TCTTGGGATTTATATCTTGAACTTGTTGATTGGGTTTCTGTCACCCAAGGTTGATCCTGAACTTGAAGTTTTGGATGGGGCTTCTTTGCCAACTAAAGGA TCGGATGAGTTCAAGCCCTTTATCCGCCGCCTTCCTGAGTTTAAGTTCTGGTACGCCATCACCAAGGCTTTTTGTGTGGCCTTCCTAATGACCTTCTTTT CTATATTTGATGTCCCTGTTTTCTGGCCCATATTACTCTGCTATTGGATTGTTCTGTTTGTCCTCACAATGAAGCGCCAACTCATGCACATGATGAAGTA CAAATATGTTCCATTCAGCCTAGGAAAGCAGAGGTATGGCAAGAAGAAGTCTGATGCAAGCAGCAGTGGCTTGATGAGGGACTAA
AA sequence Show only first row Show all	>Potri.002G034200.2 pacid=42778525 polypeptide=Potri.002G034200.2.p locus=Potri.002G034200 ID=Potri.002G034200.2.v4.1 annot-version=v4.1 MEGNGGDAANVVGPVAKWRNDFSRAFQYYLDRSTPHPMQRWLGTLAVAAIYVLRVFYAQGFYIVSYGLGIYILNLLIGFLSPKVDPELEVLDGASLPTKG SDEFKPFIRRLPEFKFWYAITKAFCVAFLMTFFSIFDVPVFWPILLCYWIVLFVLTMKRQLMHMMKYKYVPFSLGKQRYGKKKSDASSSGLMRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	0	1	Pt-RER1.5
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	2.44	0.8378
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.010G039700 [exp]	2.82	0.8481	Pt-PP2.1
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.007G077900 [exp]	5.47	0.7702
AT1G12440			A20/AN1-like zinc finger famil...		Potri.003G117100 [exp]	10.09	0.7934
AT2G30942			Protein of unknown function (D...		Potri.001G000400 [exp]	10.81	0.7902
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	11.83	0.7481	Pt-RAB1.5
AT2G25310			Protein of unknown function (D...		Potri.018G024600 [exp]	14.14	0.7935
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Potri.006G217600 [exp]	16.97	0.7615
AT2G36300			Integral membrane Yip1 family ...		Potri.004G190800 [exp]	19.74	0.7879
AT5G58030			Transport protein particle (TR...		Potri.018G110000 [exp]	24.55	0.8003

Compare expression of checked genes

Potri.002G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.