Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47270 490 / 3e-173 TUB AtTLP6 tubby like protein 6 (.1.2) AT2G18280 447 / 1e-156 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G25280 413 / 3e-142 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 409 / 9e-141 TUB AtTLP1 tubby like protein 1 (.1.2) AT2G47900 405 / 1e-139 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G43640 379 / 4e-129 TUB AtTLP5 tubby like protein 5 (.1) AT5G18680 363 / 1e-123 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 359 / 4e-122 TUB ATTLP9 tubby-like protein 9 (.1) AT1G53320 342 / 3e-115 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 71 / 4e-13 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228500 [exp] 766 / 0 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.007G023400 [exp] 488 / 2e-172 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G121600 [exp] 475 / 4e-167 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.005G192400 [exp] 429 / 5e-149 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G192300 [exp] 424 / 6e-147 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 418 / 5e-145 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.002G068200 [exp] 415 / 2e-143 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.010G031000 [exp] 413 / 4e-143 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 349 / 3e-118 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033209 [exp] 537 / 0 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10033208 [exp] 531 / 0 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010833 [exp] 529 / 0 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10010645 [exp] 529 / 0 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10014299 [exp] 487 / 1e-171 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10028309 [exp] 469 / 2e-164 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10041757 [exp] 468 / 2e-164 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10026007 [exp] 464 / 1e-162 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10018884 [exp] 421 / 1e-145 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10028579 [exp] 418 / 2e-144 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0395 [poplar] [flax] Tubby_C PF01167 [poplar] [flax] Tub Tub family
Representative CDS sequence Show only first row Show all	>Potri.002G034600.1 pacid=42776891 polypeptide=Potri.002G034600.1.p locus=Potri.002G034600 ID=Potri.002G034600.1.v4.1 annot-version=v4.1 ATGTCATTTAAGGGAAAGTTAAAGGAGATTAGAGATGACATTTCTACCACATTTTCGATGGGAAAGTTACAGAGGAACAGAACAAATCGAAGAGGGAGAG CTTATATTGCGCCTGAATTAGGAGGTGGGTCTGAGTTGTTTAGGGAGTTGATTGAAGAACAGAGTCCGTGGGCTAATTTGCCGCCTGAATTGCTACATGA TGTGATTCAGAGAGTTGAAGGCAGTGAAACTTCATGGCCTGGAAGAAGAGATGTTGTTGCTTGTGCTTCTGTTTGTAAGTCTTGGAGAGAAATCACTAAA ACTGTTGTTAAGACCCCAGAACAGTGTGGTTGCATTACTTTTCCTATCTCACTAAAGCAGCCGGGGCCGAGAGATGCTCCAATTCAATGCTTTATTAAGA GGGAAAGGGCCACTTCTACTTATCTTTTGTATCTGGGTCTCAGTCCTGCTTTGTCTGGTGATATGAATAAAGTGTTATTAGCAGCAAAGAAGATTAGGAA GGCTACAAGCACAGATTTTCGGATATCATTTGCTGGAAGTGATTTCTGTCAAACCAGCAATACCTATGTTGGAAAACTGAGGTCTAATTTCCTGGGAACC AAATTCACCATTTACGACGGTCAGACTCCATGTCCTGCAATGAGATCCAATTGTAAGCCGCAGCGTAAAGTTCGTTCCATCCAAGTGTCGCCAGGGGTTG CTGCTAGAAATTATAATGTGGCCACCGTTTCTTATGAGCTTAATGTCCTTCGTACCAGAGGTCCAAGGAGAATGCATTGCACCATTCACTCGATCCCTAT TTCTGCTATTCAAGAAGGGGGAATAGCTCCTACTCCATCGGAATTCAATAATCCTAGCAATGAGCAATCTTCTCCATTGTCTGCTTCAAAACTAAAGCAA CCACCTATTGATTTCAGCTCGAATAGCCTTGCTGAGTCATCTGATTCACTTTGCAGCAAAAATGATCCCCTGATTTTGAAAAATAAAGCTCCTAGATGGC ATGAGCAGTTGCAGTGTTGGTGTCTAAATTTCAAAGGGCGTGTTACAGTGGCCTCTGTGAAGAATTTCCAGCTGGTGGCAGCTGTGGAGCCTTGCCAAAA TGTTCCAGTAGAAGAGCAAGAAAAAGTCATTCTGCAGTTTGGAAAGATTGGGAAAGATATCTTCACCATGGACTATCGATACCCCCTCTCTGCCTTCCAA GCTTTTGCAATCTGCTTGAGTAGCTTTGACACTAAACCAGCTTGTGAATGA
AA sequence Show only first row Show all	>Potri.002G034600.1 pacid=42776891 polypeptide=Potri.002G034600.1.p locus=Potri.002G034600 ID=Potri.002G034600.1.v4.1 annot-version=v4.1 MSFKGKLKEIRDDISTTFSMGKLQRNRTNRRGRAYIAPELGGGSELFRELIEEQSPWANLPPELLHDVIQRVEGSETSWPGRRDVVACASVCKSWREITK TVVKTPEQCGCITFPISLKQPGPRDAPIQCFIKRERATSTYLLYLGLSPALSGDMNKVLLAAKKIRKATSTDFRISFAGSDFCQTSNTYVGKLRSNFLGT KFTIYDGQTPCPAMRSNCKPQRKVRSIQVSPGVAARNYNVATVSYELNVLRTRGPRRMHCTIHSIPISAIQEGGIAPTPSEFNNPSNEQSSPLSASKLKQ PPIDFSSNSLAESSDSLCSKNDPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCQNVPVEEQEKVILQFGKIGKDIFTMDYRYPLSAFQ AFAICLSSFDTKPACE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.002G034600 [exp]	0	1
AT5G48460			Actin binding Calponin homolog...		Potri.002G251600 [exp]	1.00	0.8761
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.014G049800 [exp]	3.31	0.8084
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.006G062200 [exp]	13.07	0.8325
AT3G05990			Leucine-rich repeat (LRR) fami...		Potri.010G090800 [exp]	13.78	0.8219
AT1G22030			unknown protein		Potri.003G018700 [exp]	14.17	0.7339
AT5G24320			Transducin/WD40 repeat-like su...		Potri.012G018200 [exp]	18.73	0.7844
AT1G22030			unknown protein		Potri.002G090300 [exp]	21.63	0.8041
AT5G19080			RING/U-box superfamily protein...		Potri.008G202700 [exp]	22.97	0.7824
AT5G36290			Uncharacterized protein family...		Potri.019G053400 [exp]	24.00	0.8150
AT1G17030			unknown protein		Potri.004G062000 [exp]	24.81	0.8134

Compare expression of checked genes

Potri.002G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.