Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1) AT2G46630 55 / 7e-08 unknown protein AT1G63310 46 / 9e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228400 [exp] 526 / 0 AT1G75260 103 / 2e-23 oxidoreductases, acting on NADH or NADPH (.1) Potri.014G102466 [exp] 57 / 3e-08 AT2G46630 114 / 1e-27 unknown protein Potri.002G175400 [exp] 51 / 1e-06 AT2G46630 107 / 3e-25 unknown protein Potri.001G452900 [exp] 49 / 1e-06 AT1G63310 92 / 3e-24 unknown protein Potri.011G149100 [exp] 45 / 2e-05 AT1G63310 95 / 2e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033210 [exp] 210 / 9e-62 AT1G75260 165 / 2e-45 oxidoreductases, acting on NADH or NADPH (.1) Lus10010832 [exp] 210 / 9e-62 AT1G75260 164 / 6e-45 oxidoreductases, acting on NADH or NADPH (.1) Lus10001963 [exp] 176 / 2e-48 AT1G75260 115 / 2e-27 oxidoreductases, acting on NADH or NADPH (.1) Lus10005994 [exp] 52 / 6e-07 AT2G46630 / unknown protein Lus10030217 [exp] 52 / 1e-06 AT2G46630 51 / 1e-06 unknown protein Lus10012616 [exp] 49 / 4e-06 AT1G75260 71 / 3e-14 oxidoreductases, acting on NADH or NADPH (.1) Lus10033253 [exp] 48 / 5e-06 AT1G63310 78 / 3e-18 unknown protein Lus10008287 [exp] 46 / 2e-05 AT1G63310 76 / 3e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G034700.1 pacid=42779392 polypeptide=Potri.002G034700.1.p locus=Potri.002G034700 ID=Potri.002G034700.1.v4.1 annot-version=v4.1 ATGGCAGACCAGAGGCCATTCCGCTTTCGGCTCCCTTGGTTATCAGCACCTGTTGCTCCTCCTCTACGTCCTACAGCTGAACCCCAACCTCCTCGTCCTA GAGTTGAAATTCAAGCACCAGCACGGCCAATCACCACCATCCCCATTCAACGGCCACCTTTCCGACCTGCTGGGATAACCCCAGCAACGACTCCTACTAC TCAGACTACAGCACAGGAACAAACTGAACCTCAGCCAGTGCCACCACGTCGTGCAGCCATTGAGTCCCAAGTCAATGCCCAACCAGTATCACAATCTCGA GAAACACGGGCTGCCTCTGTGCCACCATCACAATCTCGTGAAACTCCACAATCAAGAGCTGCATCTGTGCCCCCATCACCCTCTCGTGCGAAAACTCAAT CCCAAGCCGCCCCTCAAACCCAGTCACCATCTCGAGCAACTCCACAATCAAGAGCTGCATCTGTGGCTCCTTCTCCTTCTCGCACCACTTCCCAGCCCCA ATCAGCAGCAGCAGTGACGGTCCCCCAAACTCAATCCCCGTCTCGTTTGGCCACTCAAGTTCCAGGTAGAAAATCTCCACAGCTCTCTTCTCCATCTAAG ACAGCTACCCAAGTGCAGCCAACAGTTTCTCAGTCCCCATCAAAGAAATTACAACTAGCAACACAAGAGATCTCTCAGCCTCCTCCCAAGTCTACTCAAT CCGACACTCAACAGGAAGAAACAAAACCAACACCTGCAGCAGAGCCTGTACAAGCATCAGATGCTGTGACAGCACCAACACCAACTCCTGAGCCAGCACT TGAGACGCCTGCATCATTACAAAAATCAGATTCCAGGACCATAGGTGCTGATCATCCTATGCCTCTTTCACAACCAGTGAAACGAGTAAAGGAAGATATT TTTGAAAGAAAGAAGACAACGACCATTAGCCCTAATGGGGAAACTATCAAAACAGCAAGAACCCGGTCTGCCTTTGGCGAATCTCATCAAAAAACATCCA TGTCCAGCGGAGAAAAAGTTCCCCTGCAAAAAGAAATCAGGGAAGATATTTCCAAGTTCGTTCATAACCTGGGAATGGAGCACATGGAGCATCCCATAGG AGAAAAGCCTGTCAGCGTTGTTACTCTAGCAGGTGAAAACAGAGGAGCTACCATGTATGTGGGCTCTGAATCATCAAGAAAGGATGGGTCAGTCCACATT CATCGTGGTTATAAGATCAATCCAGATGAGAGCAGCGAAGCTACTACTGATGGAGAAGGAAGCTCGAGGGGTAGAAGCTCCAAAGATCTGCTGACAAAAG AAGATCCGGCAAGGAAGGCATATATTAACAGTAACACACAAAGTGTCAACAACTCGATATTGTTTGAAACTTCAGTAAGCGAAAGAAGCCCTGGTGTACA GCTGAGTCTCTCTTATAACGATGAAGAACCCAGCAAGAACAGCAGTAAACCAGTGCGTCTGGAGACTCGCAAGGCTGAATTCCAAGTCACCCCTGCTGAG AAGCTTAGTTATGAGCCGAAGGTAAGAAGACGATGCCTAAGAGGGCTTTTCTTGGAATCAAGCGACTCCGACCCTGATAATCCAGAAAAGCCTCGAAGAC ATGGCTGTCGCTATAGTTGTGGGCAGAAGAGAAAAGATAAGGACATAGGGGTTCTCTGA
AA sequence Show only first row Show all	>Potri.002G034700.1 pacid=42779392 polypeptide=Potri.002G034700.1.p locus=Potri.002G034700 ID=Potri.002G034700.1.v4.1 annot-version=v4.1 MADQRPFRFRLPWLSAPVAPPLRPTAEPQPPRPRVEIQAPARPITTIPIQRPPFRPAGITPATTPTTQTTAQEQTEPQPVPPRRAAIESQVNAQPVSQSR ETRAASVPPSQSRETPQSRAASVPPSPSRAKTQSQAAPQTQSPSRATPQSRAASVAPSPSRTTSQPQSAAAVTVPQTQSPSRLATQVPGRKSPQLSSPSK TATQVQPTVSQSPSKKLQLATQEISQPPPKSTQSDTQQEETKPTPAAEPVQASDAVTAPTPTPEPALETPASLQKSDSRTIGADHPMPLSQPVKRVKEDI FERKKTTTISPNGETIKTARTRSAFGESHQKTSMSSGEKVPLQKEIREDISKFVHNLGMEHMEHPIGEKPVSVVTLAGENRGATMYVGSESSRKDGSVHI HRGYKINPDESSEATTDGEGSSRGRSSKDLLTKEDPARKAYINSNTQSVNNSILFETSVSERSPGVQLSLSYNDEEPSKNSSKPVRLETRKAEFQVTPAE KLSYEPKVRRRCLRGLFLESSDSDPDNPEKPRRHGCRYSCGQKRKDKDIGVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75260			oxidoreductases, acting on NAD...		Potri.002G034700 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	1.00	0.9686
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036500 [exp]	2.00	0.9520
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.002G017000 [exp]	2.44	0.9650
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245500 [exp]	3.46	0.9573
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	4.24	0.9443
AT2G41200			unknown protein		Potri.006G038600 [exp]	5.00	0.9510
AT1G30080			Glycosyl hydrolase superfamily...		Potri.004G132700 [exp]	6.00	0.9284
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.003G101500 [exp]	8.30	0.9167
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.014G110000 [exp]	8.48	0.9257
AT5G40960			Protein of unknown function (D...		Potri.017G064400 [exp]	8.66	0.9242

Compare expression of checked genes

Potri.002G034700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.